Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  297 bits (761), Expect = 6e-85
 Identities = 170/469 (36%), Positives = 267/469 (56%), Gaps = 46/469 (9%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F+DL L+  +L A+TE G+ +PTPIQA AIP +L  +D +G AQTGTGKTA+F LP+++ 
Sbjct: 3   FADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62

Query: 88  LNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144
           L   + +   P+++++ PTRELA QVA   +  G+  K L +  + GG  + DQ++AL+ 
Sbjct: 63  LAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMALLIGGVQMGDQIKALEK 121

Query: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204
           G  +++ TPGR+ DL  R ++ L+ C+  ++DEAD ML MGF+ D+  I  + P   Q +
Sbjct: 122 GVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQTL 181

Query: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEE 264
           LFSATMPP++K++ +RFL NP+ ++VA        + Q+   V   +K EA+  +LE E+
Sbjct: 182 LFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEAED 241

Query: 265 TDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324
             ++++F   +     L   L   GFK+  +HGDI Q+ R   ++  + G ++ILVA+DV
Sbjct: 242 VQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVASDV 301

Query: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
            ARGLD+  ++HV+N+D P+  + Y+HRIGRTGRAG KG A   V       +  I+++ 
Sbjct: 302 AARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQKLI 361

Query: 385 RSSMEEIQLPHRDKVAESRLTKLGQE-LAADKEFSSLERFADLVEKLQASLEIDATTLAA 443
            + ++ ++ P    VA +   +  +E   AD+E    ER                     
Sbjct: 362 GTKIDYVETP----VAAAPAPRAKEEPRKADREERDNERSGG------------------ 399

Query: 444 ILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDG--DRPARR 490
               R+  ++P             ER+  RR ++RDDRRD   D PA R
Sbjct: 400 ----REARRKP-------------ERKDDRRSDKRDDRRDDRRDAPAAR 431