Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

 Score =  275 bits (703), Expect = 3e-78
 Identities = 169/455 (37%), Positives = 263/455 (57%), Gaps = 10/455 (2%)

Query: 21  MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF 80
           M   +  F+ L L++A+L+ L  +G+ S TPIQA ++PV+L+G+D + +A+TG+GKTAAF
Sbjct: 1   MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF 60

Query: 81  SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR 140
            + LLN +N   +  QA+V+ PTRELA QVA E++ L +    +K+L + GG S+  Q+ 
Sbjct: 61  GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA 120

Query: 141 ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200
           +L+ GAHI+VGTPGR++  + +  L LD  +T +LDEAD ML MGF D +  I+ + P  
Sbjct: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180

Query: 201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260
            Q +LFSAT P  +K++   F+RNP+ V V  S  T  ++EQ++  +   ++ EA+ R+L
Sbjct: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVE-SLHTDNQIEQRFIEIDPQQRLEAVTRVL 239

Query: 261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
                 + + F  T+Q  E +   L A+G  A ALHGD+ Q  R++ +         +LV
Sbjct: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299

Query: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
           ATDV ARGLD+  +  V N ++  D E ++HR+GRTGRAG KG A+ LV   +    + I
Sbjct: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAI 359

Query: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT 440
           E +  S +   QL       +S   K G+ L      ++L   A   +KL+    + A T
Sbjct: 360 EALQNSPLRWDQL-------DSLKNKGGEPLL--PVMTTLCIAAGRKDKLRPGDILGALT 410

Query: 441 LAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRR 475
             A +  +Q GK  +F   A   +E    +++ +R
Sbjct: 411 GDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQR 445



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T  +  GR   ++  DI+GAL  + G+    +G I +     FV + +A++     +L  
Sbjct: 389 TLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRLNS 448

Query: 564 LRIR 567
            +I+
Sbjct: 449 GKIK 452