Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  429 bits (1104), Expect = e-124
 Identities = 243/555 (43%), Positives = 352/555 (63%), Gaps = 22/555 (3%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F+ L LN  I++A+   G+  P+ IQ  +IP++L G D +G+AQTGTGKTAAF+LP+LNK
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
           +++S+ +PQA+++APTRELA+QVA   +   + + G+ V+ +YGGA +  Q+RA+++GA 
Sbjct: 68  IDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGAQ 127

Query: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
           IVV TPGR+ D + RD   L      +LDEADEMLK+GF+DD+  I +  P + Q VLFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFS 187

Query: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267
           AT+P  ++ I ER LR P+ V +    QTV  +EQ + +V   +K  A+ RLLE EE DA
Sbjct: 188 ATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327
            I FVRT+Q T  LA  L A+G+KAAAL+GDI Q+ RER +D +K G +DI+VATDV AR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
           GLDVPRITHV+N D+P+D ESY+HRIGRTGRAGR G+A+LLV   + RML+ IERVT   
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQK 367

Query: 388 MEEIQLPHRDKVAESRLTKLGQELA---ADKEFSSLERFADLVEKLQASLEIDATTLAAI 444
           + E +LP+   V ++R+ KL   LA   A+ E +      +L ++L   L   A  LA+ 
Sbjct: 368 VAEARLPNAQAVLDARIKKLTSSLAPLVAEAEAT----HGELFDRLTTDLGCSARALASA 423

Query: 445 LLKRQQGKRPLFYVGAD---PMIEAM----EREKSRRRERRDDRRDGDRPARREFG-GRD 496
           LL++    + L     +   P++ +     ER +   R  R DR D +R A      GR 
Sbjct: 424 LLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAEGRV 483

Query: 497 QENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSND 556
           +        +  +G   G+  K+++GA+ NE GL + +IG I++    + V+LP+     
Sbjct: 484 R-------CRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEK 536

Query: 557 VSSKLRKLRIRQKEV 571
           + SKL+  R+  K++
Sbjct: 537 LLSKLKDTRVAGKQL 551