Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  504 bits (1297), Expect = e-147
 Identities = 289/626 (46%), Positives = 388/626 (61%), Gaps = 19/626 (3%)

Query: 21  MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF 80
           M +    F+DL L + IL ALT++G+  P+PIQA  IP LL GRD LG AQTG+GKTAAF
Sbjct: 1   MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF 60

Query: 81  SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR 140
           SLPLLN L+     PQ +V+APTRELA+QVA  + +  ++++G+ V+ +YGG     Q+R
Sbjct: 61  SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120

Query: 141 ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200
           AL+ G  IVVGTPGR+ D + R  L L +    +LDEADEML+MGF++DV  IM Q PE 
Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180

Query: 201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260
            Q  LFSATMP  ++ I  RF++ P+ V +  S  T   + Q YW V G+ K+EA+ R L
Sbjct: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240

Query: 261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
           E E+ DA+I+FVRT+  T  +A+ L   G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
           ATDV ARGLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V   + R+LR I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL---EID 437
           ER  + ++ E++LP+ + + + RL K   ++    E S L+++  L+ K+Q S    E+D
Sbjct: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD 420

Query: 438 ATTLAAILLKRQQGKRPLFYVGADPM---IEAMEREKSRRRERRDDRRDGDRPARREFGG 494
             TLAA LLK  QG+RPL      PM    E  +R+    R+R D    GDR  R     
Sbjct: 421 LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRER 480

Query: 495 RDQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMS 554
           RD    D   Y+++VGRD GV+V+ IVGA+ANE  ++   IG IKL   H+ ++LPK M 
Sbjct: 481 RDV--GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538

Query: 555 NDVSSKLRKLRIRQKEVGAVVCDF---DDFRESRGGARREGGPRREGGRRPEGNREGGFR 611
            +V     + RI  K +   +          E RGG R   G RREGGR   G R     
Sbjct: 539 GEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGER----- 593

Query: 612 GGREGGREGGRGRGGEGRPFREGERR 637
             REGGR  GR   GE R  R G RR
Sbjct: 594 --REGGRGDGRRFSGERRESR-GPRR 616