Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  276 bits (707), Expect = 1e-78
 Identities = 149/375 (39%), Positives = 222/375 (59%), Gaps = 7/375 (1%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F  L L+  IL A+ E G+  PTPIQ  AIP +LEGRD +  AQTGTGKTA F+LPLL
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 86  NKLNLSQ-----YKP-QAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQM 139
             L   Q      +P +A+++ PTRELA Q+   +++  + +  ++ L ++GG SI  QM
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQM 119

Query: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
             L+ G  ++V TPGR+ DL  ++ + LD+    +LDEAD ML MGF+ D+  ++ + P 
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179

Query: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL 259
             Q +LFSAT    +K + E+ L NP  ++VA  N    +V Q    V    K E ++ +
Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239

Query: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
           +        +VF RT+     LA+ L   G ++AA+HG+  Q  R R +   K G I +L
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299

Query: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
           VATD+ ARGLD+  + HV NY++P   E Y+HRIGRTGRA   G+A+ LV  ++ ++LR 
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query: 380 IERVTRSSMEEIQLP 394
           IE++ +  +  I +P
Sbjct: 360 IEKLLKKEIPRIAIP 374