Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., ATP-dependent RNA helicase RhlE from Erwinia tracheiphila SCR3

 Score =  284 bits (726), Expect = 7e-81
 Identities = 152/374 (40%), Positives = 223/374 (59%), Gaps = 7/374 (1%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F  L LN+ IL A+TE G+  PTPIQ  AIPV+L GRD +  AQTGTGKTA F+LPLL
Sbjct: 1   MSFDSLGLNADILRAVTEQGYNQPTPIQLQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL 60

Query: 86  NKLNLSQYKPQ------AIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQM 139
            +L+ ++   +      A+++ PTRELA QV   +++  + +  L+ L ++GG SI  QM
Sbjct: 61  QRLSSTESNQKGRRPVRALILTPTRELAAQVGENVQDYSKYLN-LRSLVVFGGVSINPQM 119

Query: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
             L+ G  +++ TPGR+ DL  ++ L L +    +LDEAD ML MGF+ D+  ++ + P 
Sbjct: 120 MKLRGGVDVLIATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPA 179

Query: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL 259
             Q +LFSAT    +K + E+ L NPE V+VA  N    +V Q    V    K E ++ +
Sbjct: 180 KRQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHFVDKKRKRELLSLM 239

Query: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
           +  +     +VF RT+     LA+ L   G  AAA+HG+  Q  R R +   K   I +L
Sbjct: 240 IGRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDSKIRVL 299

Query: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
           VATD+ ARG+D+  + HV NY++P   E Y+HRIGRTGRA   G+A+ LV  ++ ++LR 
Sbjct: 300 VATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query: 380 IERVTRSSMEEIQL 393
           IER+ +  +  I L
Sbjct: 360 IERLLKREIPRIAL 373