Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  503 bits (1296), Expect = e-147
 Identities = 297/655 (45%), Positives = 400/655 (61%), Gaps = 39/655 (5%)

Query: 21  MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF 80
           M +    F+DL L + IL AL ++G+  P+PIQA  IP LL GRD LG AQTG+GKTAAF
Sbjct: 1   MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF 60

Query: 81  SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR 140
           SLPLLN ++     PQ +V+APTRELA+QVA  +    ++++G+ V+ +YGG     Q+R
Sbjct: 61  SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR 120

Query: 141 ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200
           AL+ G  IVVGTPGR+ D + R  L L +    +LDEADEML+MGF++DV  IM Q P+ 
Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDG 180

Query: 201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260
            Q  LFSATMP  ++ I +RF+++P+ V +  S  T   + Q YW V G+ K+EA+ R L
Sbjct: 181 HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL 240

Query: 261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320
           E E+ DA+I+FVRT+  T  +A+ L   G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380
           ATDV ARGLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V   + R+LR I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQ---ASLEID 437
           ER  + ++ E  LP+ D + + RL K   ++    E S L+++  L+ ++Q      E+D
Sbjct: 361 ERTMKLTIPEADLPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEELD 420

Query: 438 ATTLAAILLKRQQGKRPLFYVGADPMIEAME-REKSRRRERRDDRRD----GDRPARREF 492
             TLAA LLK  QG+R L      PM    E R++  R ERR DR D    G R  R E 
Sbjct: 421 METLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRNDRGPRGDRPER 480

Query: 493 GGRDQENH------DWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTF 546
           GG D+         D + Y+++VGRD GV+V+ IVGA+ANE  ++   IG IKL   H+ 
Sbjct: 481 GGEDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 540

Query: 547 VQLPKAMSNDVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNR 606
           ++LPK M  +V     + RI  K +   +      R  RGG RR GG R  GG R     
Sbjct: 541 IELPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQPRPDRGGERR-GGGRSFGGER----- 594

Query: 607 EGGFRGGREGGREGGRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRRE 661
                  REGGR  GR   GE R F  GERR       E+ G  R E G SRRR+
Sbjct: 595 -------REGGRSEGR---GEPRRF-SGERR-------ENRGPRRDE-GTSRRRD 630