Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  281 bits (719), Expect = 5e-80
 Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 7/375 (1%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F  L LN  IL A+ E G+V PTPIQ  AIP +L+GRD +  AQTGTGKTA F+LPLL
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 86  NKLNLSQ-----YKP-QAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQM 139
             L  +Q      +P +A+++ PTRELA Q+   +++  + +  ++ L ++GG SI  QM
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLN-IRSLVVFGGVSINPQM 119

Query: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
             L+ G  +++ TPGR+ DL  ++ + LD     +LDEAD ML MGF+ D+  ++ + P 
Sbjct: 120 MKLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPA 179

Query: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL 259
             Q +LFSAT    +K + E+ L NP  V+VA  N    +V Q    V    K E ++++
Sbjct: 180 RRQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239

Query: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
           +        +VF RT+     LA+ L   G ++AA+HG+  Q  R R +   K G I +L
Sbjct: 240 IGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299

Query: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
           VATD+ ARGLD+  + HV NY++P   E Y+HRIGRTGRA   G+A+ LV  ++ ++LR 
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query: 380 IERVTRSSMEEIQLP 394
           IER+ +  +  I+ P
Sbjct: 360 IERLLKKEIPRIETP 374