Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Dickeya dadantii 3937

 Score =  277 bits (708), Expect = 9e-79
 Identities = 152/374 (40%), Positives = 223/374 (59%), Gaps = 7/374 (1%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F  L L++ IL A+ E G+  PTP+Q  AIPV+LEGRD +  AQTGTGKTA F+LPLL
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 86  NKLN--LSQYKPQ----AIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQM 139
             LN   SQ K +    A+++ PTRELA Q+   ++   + ++ L+ L ++GG SI  QM
Sbjct: 61  QLLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLR-LRSLVVFGGVSINPQM 119

Query: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
             L+ G  I++ TPGR+ DL  ++ + L      +LDEAD ML MGF+ D+  ++ + P 
Sbjct: 120 MKLRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPP 179

Query: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL 259
             Q +LFSAT    +KE+  + L NP  V+V   N     V Q    V    K E ++ L
Sbjct: 180 KRQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHL 239

Query: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
           +   +    +VF RT+     LA+ L   G  AAA+HG+  Q  R R + + K G I +L
Sbjct: 240 IGKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVL 299

Query: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
           VATD+ ARGLD+ ++ HV NY++P   E Y+HRIGRTGRA   G+A+ LV  ++ ++LR 
Sbjct: 300 VATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRD 359

Query: 380 IERVTRSSMEEIQL 393
           IER+ +  +  +++
Sbjct: 360 IERLLKREIPRMEI 373