Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., ATP-dependent RNA helicase DeaD from Acinetobacter radioresistens SK82

 Score =  282 bits (721), Expect = 4e-80
 Identities = 223/672 (33%), Positives = 317/672 (47%), Gaps = 99/672 (14%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F++ +L+ ++  ALT++GF +PT +Q  AIP  LEG+D L  +QTG+GKTAAF LP LN 
Sbjct: 5   FAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNA 64

Query: 88  LN------------LSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
           L              +  +P  +V++PTRELA QV  +   L +++KG+++  I GG   
Sbjct: 65  LADQDTFLPFKERMRAVTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGMPF 124

Query: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
             Q++ LK GA +VV TPGR+ DL+ R ++ LD+    I+DEAD ML +GF +D+  I E
Sbjct: 125 GKQIQQLK-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISE 183

Query: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVE-KDE 254
            A    Q ++FSAT    +  + E  +++P  + +   + T   + Q      G E K +
Sbjct: 184 LALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKK 243

Query: 255 AMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQG 314
            +   LE E  D ++VF  T++DT+ LA+ L   G    ALHG +PQ++R R +  I++G
Sbjct: 244 LLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREG 303

Query: 315 VIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQI 374
              ILVATDV ARGLDVP I+HV N+ +P   E Y+HRIGRTGRAGR GKAI L    + 
Sbjct: 304 RAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAITLATYRER 363

Query: 375 RMLRTIERV--TRSSMEEIQ--LPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKL 430
             +R +E    TR ++ EI+   P        R    G+       F    RF       
Sbjct: 364 GKIRALEDYLETRLNVSEIEGLEPSPPPARPRREGGGGKRPGGRGGFGGGRRFE------ 417

Query: 431 QASLEIDATTLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDR--RD-GDRP 487
                           KR++G R       D    + +      R   DDR  RD GDRP
Sbjct: 418 -----------GESNFKRREGGRD------DRPRRSFDDRPRGERPFGDDRPKRDFGDRP 460

Query: 488 ARREFGGRDQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFV 547
           ARR+FG R Q + D         + +G                 + S G  +  +     
Sbjct: 461 ARRDFGDRPQRSFD--------DKPRG-----------------ERSFGGAERPRREFNS 495

Query: 548 QLPKAMSNDVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARREGG--PRREGGRRPE-- 603
             P+    D        R + +  G        F +   G R  GG  PRREGG   +  
Sbjct: 496 DRPQRSFGD--------RPQSRSFGGEDRPRRSFDDKPRGERNFGGDRPRREGGFNDKPR 547

Query: 604 --------GN------REGGFRGGREGGREGGRGRGGEGRPFREGERRFERNRSGESSGS 649
                   GN      R GGFR     G    R  GG+ RP R  + +    RS      
Sbjct: 548 FDSNDDNRGNRVDYKPRNGGFRA---AGDRSERPAGGD-RPRRSFDDKPRGERSFGGEDR 603

Query: 650 YRGERGHSRRRE 661
            R + G  RRR+
Sbjct: 604 PRRDFGGERRRK 615