Pairwise Alignments

Query, 627 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  214 bits (545), Expect = 2e-59
 Identities = 138/444 (31%), Positives = 236/444 (53%), Gaps = 5/444 (1%)

Query: 184  SLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHE-ELAVIHIGFA 242
            ++  +I   ++++++IE+  +HD  TG  NR+ L  +L   +AQ    + +LAV+ I   
Sbjct: 1057 AIFSDISAIKSSQRRIEFLATHDELTGIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLD 1116

Query: 243  NARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLC 302
            N + +   LG+ + D +LKQ  ERL          AR        +L    L+ ++N + 
Sbjct: 1117 NFKVINDSLGHDVGDQLLKQATERLKHCVRDSDTLARLGGDEFVAVLTDVSLE-KVNSVA 1175

Query: 303  HRLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVF-F 360
             R++    A F      + ++  IG+++  +  +D   LL+HA ++M   K+ G   + F
Sbjct: 1176 ARIVDFLGASFSINDKSLFVSASIGISVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQF 1235

Query: 361  HSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEF 420
             +  +     ++  LE  L  A+      + +QP+V + T   VGAEALLRW+ P LGE 
Sbjct: 1236 FADEMKVIALQRLTLETGLRLALETKSFRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEV 1295

Query: 421  SNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFC-IAINVSSVQLKNSGFVEQ 479
            S    I +AE  GLI  +G  V    L+  + W     T   IAINVS+ QL+++GF  +
Sbjct: 1296 SPAHFIPIAESCGLIGAIGETVFTMVLEQIAYWREKGLTVPRIAINVSAHQLRDAGFAAK 1355

Query: 480  IRDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYL 539
            +   L      +  + +E+TES L+       ++L     +G+ +S+DDFGTGY+S  YL
Sbjct: 1356 VGSWLDSSGISSELIGIELTESALMERIDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYL 1415

Query: 540  KKFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQG 599
            KK P   +KID+SF++ I     D+ I ++++ +++ L + VV EG+ES +Q   + E+G
Sbjct: 1416 KKLPIHELKIDRSFVDGIALERDDRSIAKAIIDMSRALGMRVVAEGVESEEQLGVLKEEG 1475

Query: 600  CDVGQGFLYGKPMPSEVFTLKLES 623
            CD+ QG+L+ +P+  E F   +E+
Sbjct: 1476 CDMVQGYLFHRPLSPEAFAKVIET 1499