Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  212 bits (540), Expect = 6e-59
 Identities = 204/817 (24%), Positives = 366/817 (44%), Gaps = 50/817 (6%)

Query: 33  LTLIIASIFALTALAQRMEQVIVKQGRDALTADTVF--VSGNPLPESLLTLTAQQASQTS 90
           L L +A+I  + + A  + Q + ++GR  L  D  F  V      E   +L       + 
Sbjct: 33  LVLGVAAIAGIGSFAGALTQGLEREGRAILGGDAGFSVVQREMTAEERASLDRHGTLGSV 92

Query: 91  QMTRFATMAFSDQG-MQLVTVKAVDSAYPLRGE------MRLSDGQQTFNHVASNQLWLE 143
            + R   MA ++ G   L  +KAVD  YPL G       M ++D  +  N V       +
Sbjct: 93  ALLR--AMARTEAGDASLAELKAVDGTYPLVGTVGLDPPMPVADALKEKNGVFGAAA--D 148

Query: 144 PRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPSVYIHASDVDKTGAIQP 203
           P +  +LGV  GD + +GDA   +   +  EP    +       + I  + +  TG IQP
Sbjct: 149 PVLLGRLGVKTGDRIRVGDATLEIRAALASEPDKLSSGVGLGARLLISQAALPATGLIQP 208

Query: 204 GSRVQFSLFMTGDDSAIESIKQQVSLTASD--------RWRDQESGSRTNEVFERTQQYL 255
           GS V++S  +  D+ A E++K  +              R RD  +      V  R  Q+L
Sbjct: 209 GSLVRWSYRLLLDNPAPENLKAVMEEVREPMGRAGFEVRTRDGATPQLARNV-GRISQFL 267

Query: 256 SLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLALQVGLLLVFAVV 315
           +L     +L+    +      +++ +   IA LK++GA+RR +      ++GL+  F +V
Sbjct: 268 TLVALTALLVGGVGVANAVSSHLAGKLEVIATLKAVGATRRDVFLTYGAEIGLIAAFGIV 327

Query: 316 LGSVIGVGLESLLRLPLKDLLPDPL-PSYGLRPLWIALASSFLIAVPALGIPLGRLLSVS 374
           LG ++G  L       +  L+P PL P      L  A     ++A     IPL R     
Sbjct: 328 LGLMLGAALPFAATAAIGALVPFPLDPRIDGAALARAALYGLVVAAVFSVIPLARAQEAR 387

Query: 375 AVAVMQPVTAQTRWQRNLLLIMVP-------IVPLLLVYWQNQLIWIVLIGIVVLFAMLA 427
             A+ +    + R + +L  +++        +V  L      +   I L     +F +L 
Sbjct: 388 VSALFRDGIGEMRRRISLPYLLLVGGLGAALVVLALFTSDDKRAAAIFLAAAAAVFVLLR 447

Query: 428 VVS--VLVTRLLAKLPLNPAMALALSRINRSGAASGLQFGALALSLMLLAIIWLVRTDLL 485
           +V+  ++     A  P   A  LAL  I+R GA +     +L L L LL  I LV   L 
Sbjct: 448 LVASGLMALARRAPRPRGAAARLALGNIHRPGALTPSVVLSLGLGLSLLVGISLVDASLN 507

Query: 486 SDWQRTLPENAPNAFALNISESEKASYLAAL-DTASIERSAAYPIMRGRLTHINGQEAKQ 544
            +    + E+AP+ F +++  SE+A + A L + A      + P++RGR+TH+    A++
Sbjct: 508 RELNGPVRESAPSFFFVDVPNSEEAEFRAFLAEQAPGAVVKSVPMLRGRITHVKDIPAEE 567

Query: 545 YAQNGEESSDALRRELNLTWAEQLPDYNPILQGEW----QSQNGVSVEQEVASDLGLKLG 600
                 +++  L+ +  ++ +  +P+ + ++ G W    +++  VS + E+A+ LGLKLG
Sbjct: 568 VKPR-PDAAWVLQSDRGISSSATVPEGSTVVAGTWWTGDETEPLVSFDSELAAGLGLKLG 626

Query: 601 DTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLISFRIQPEHD-- 658
           DT+T  +  ++V+A++  +RQV+W  +  NF  +FSP      P + L +       D  
Sbjct: 627 DTVTVSVLGRSVTARIANLRQVKWERLGINFVMVFSPATFAGAPYTVLSTLAFPDGGDTA 686

Query: 659 ---ALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRL 715
              +LL  ++ + P ++ + ++    + Q +L  +   +   + + ++  VL++   L  
Sbjct: 687 REISLLKAMAARFPAITTVRVKETLEEAQRMLDNLSLGIRAASLVTLITSVLVLAGALAA 746

Query: 716 SLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADA----VVAAVMKWG 771
              +R  +  + +TLGA+R R+      EY  + L   +VA+ +  A    VV  VM   
Sbjct: 747 GRERRIYDAVILKTLGATRGRLTLAYGLEYAGLGLATAIVAAAAGTAAAWGVVTQVMDIP 806

Query: 772 FSLTPSLHMALWFVLPALTFCTLAAVVSSLLKRLLAP 808
           F+  P   +  +  + A    TL   +   L+ L AP
Sbjct: 807 FTFAP---LPAFGAVAAALAVTLVVGLLGTLRALSAP 840