Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 836 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  346 bits (887), Expect = 4e-99
 Identities = 235/815 (28%), Positives = 419/815 (51%), Gaps = 40/815 (4%)

Query: 1   MKALPPASLNRRLLRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRD 60
           M  LP   L    +R  L + R G+L  +  AL + +A+  A+     R+   ++ +  +
Sbjct: 1   MARLPLLRLFSLAMRQLLRDARAGELRVLFFALLVAVAASTAIGYFGARLNGAMLLRATE 60

Query: 61  ALTADTVFVSGNPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLR 120
            L AD V    +P     +    +     +++  F+++  +D G+QL ++KAV+  YPLR
Sbjct: 61  FLGADLVLEGSSPARPEQIRSGTELGLDHARIVEFSSVIATDNGIQLSSIKAVNEQYPLR 120

Query: 121 GEMRLSD---GQQT-FNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPG 176
           GE++ +    G +T        + W+E R+   L + +GD++ +G     ++  +  EP 
Sbjct: 121 GELKSAAAPFGAETPGGGPKPGEAWVEARLLTALDLKVGDSIDVGMKTLRLARVLTYEPD 180

Query: 177 LSFNPFQQMPSVYIHASDVDKTGAIQPGSRVQFSLFMTGDDSA--IESIKQQVS--LTAS 232
            + N +   P V I+ +D+D TG +QPGSRV +     G   +  +++ +  V   L A+
Sbjct: 181 RAGNFYSLTPRVMINLADLDATGVVQPGSRVSYRELWRGPQGSTVLQTYRDLVKPGLAAN 240

Query: 233 DRWRDQESGSRT-NEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSL 291
            R +D   G++       + ++YL++   + +L+A   + L+   + + R    A+L+ L
Sbjct: 241 QRLQDSRDGNQQIGGALGKAERYLNMASLVAVLLAGVAVALSANRFATRRFDASALLRCL 300

Query: 292 GASRRWLRRWLALQVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYGLRPLWIA 351
           G SRR      +LQ+ +L + A + G+V+G   +  L   L DLLP  +P  GL P  IA
Sbjct: 301 GLSRREAMLLFSLQLSVLGLLASLTGAVLGWLAQFGLFYFLHDLLPADVPPGGLLPA-IA 359

Query: 352 LASSFLIAVPALGIP----LGRLLSVSAVAV-MQPVTAQTRWQRNLLLIMVPIVPLLLVY 406
              + L+A+    +P    LGR+  +  +   M P+ + T W    ++    +  L L+ 
Sbjct: 360 GIGTGLVALAGFALPPLAALGRVPPLRVLRRDMLPIPSST-W----MVYGAALFALGLIM 414

Query: 407 WQNQLIWIV--------LIGIVVLFAMLAVVSVLVTRLLAKLPLNPAMALA-LSRINRSG 457
           W+  L  ++        ++  ++L  +L ++   + RLLA+  L   + L  L R   + 
Sbjct: 415 WRLSLDLVLTFALLGGGVVAALILGGLLLLLLQSLRRLLARASLPWRLGLGQLLRHPLAA 474

Query: 458 AASGLQFGALALSLMLLAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALD 517
           A   L FG + LS+ L+A   L+R +LL  WQ  LP++APN FALNI  ++K ++ A L 
Sbjct: 475 AGQSLAFGLILLSMGLIA---LLRGELLDTWQNQLPKDAPNYFALNILPADKDAFGARLL 531

Query: 518 TASIERSAAYPIMRGRLTHINGQEAKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQG 577
               + +  YP++ GRL  ING+  ++          A++R+L+LTWA +LP  N +  G
Sbjct: 532 ELQAQSAPLYPVVPGRLISINGEPVQEIVSKDSSGDRAVQRDLSLTWAAELPPGNALTAG 591

Query: 578 EWQSQN------GVSVEQEVASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNF 631
            W SQ       GVSVE +VA  L LKL D L F +  +   A+V ++R + W   +PNF
Sbjct: 592 SWWSQQPTDEVPGVSVEAKVAESLKLKLDDHLVFTVGGENREARVTSLRTINWDNFQPNF 651

Query: 632 YFIFSPDVVQNLPVSYLISFRIQPEHDALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIV 691
           + IF P  +++LP +YL SF + P HD  +  LSR  P V+++ +  +  +++++L Q+ 
Sbjct: 652 FMIFQPGTLKDLPTTYLTSFYLAPGHDQQIVDLSRAFPAVTILQVEALLEQLRSILAQVT 711

Query: 692 WSVTVLAALGVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALV 751
            +V  +    + AG+ ++F+ L+ +L +R ++  L R LGA R+ ++     E+G++  V
Sbjct: 712 LAVEYVLLFVLAAGMAVLFSGLQATLDERIRQGALLRALGAERKLLVKARRIEFGLLGAV 771

Query: 752 GGLVASVSADAVVAAVMKWGFSLTPSLHMALWFVL 786
            GL+A++  + V   + ++ F L    H   W +L
Sbjct: 772 SGLLAALGTELVTFVLYRYAFDLAWQPHP--WLLL 804