Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., ABC transporter, fused permease protein from Variovorax sp. SCN45

 Score =  298 bits (764), Expect = 6e-85
 Identities = 211/786 (26%), Positives = 391/786 (49%), Gaps = 36/786 (4%)

Query: 20  EIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSGNPLPESLL 79
           ++R G+L  + VA+ L +A++ A+   A R++  + +  R  L  D V VS NP P++ +
Sbjct: 15  DLRAGELRLLIVAVLLAVAALTAVGFFADRLKGGLQRDARQLLGGDAVVVSDNPTPDAFV 74

Query: 80  TLTAQQASQTSQMTRFATMAFSDQGM----QLVTVKAVDSAYPLRGEMRLS-----DGQQ 130
                   + +    F TMA ++       +LV +KAV + YPLRG ++ S      G  
Sbjct: 75  AQAKSLGLEGTGTYGFPTMARAEDAQGGASKLVALKAVTAGYPLRGSLQTSATLDGPGAV 134

Query: 131 TFNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEP--GLSFNPFQQMPSV 188
           T +   + ++W++  + D LG+ IGD + +GD    V   +  EP  G  F  F   P V
Sbjct: 135 TRDIPPAGEVWVDASLLDSLGLKIGDTLLLGDTGLRVGRVITLEPDRGAGFMSFS--PRV 192

Query: 189 YIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVSLTASD------RWRDQESGS 242
            ++ +DV +T  +QP SRV +   + G+D+A++        T         R    ESG 
Sbjct: 193 MLNQADVARTALVQPASRVGYRYAVAGNDAAVKRFTDWADATLKKGELRGVRLDSFESGR 252

Query: 243 -RTNEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRW 301
               +  +R +++LSL   +  L++A  + L  + + ++     AML+ LG S+R +   
Sbjct: 253 PEMRQTLDRAEKFLSLVALLAALLSAVAVALAARGFAASHLDDCAMLRVLGQSQRTIAAA 312

Query: 302 LALQVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYGLRPLWIALASSFLIAVP 361
              +  ++ V A  LG  IG  +  +  L L  L+   LP+  L P+   L     +   
Sbjct: 313 YTFEFAVIGVVASGLGVAIGFAVHYVFVLLLSGLVETALPAATLWPVAFGLGMGLTLLF- 371

Query: 362 ALGIPLGRLLSVSAVAVMQPVTAQTRWQRNLLLIMVPI-----VPLLLVYWQNQLIWIVL 416
           A G+P   +L ++ V  ++ +       +   L ++ +       LL+    +  + ++ 
Sbjct: 372 AFGLP--PVLQLARVPPLRVIRRDVGGLKPASLAVLGVGVAGFAALLMAASSDIKLGLIA 429

Query: 417 IG----IVVLFAMLAVVSVLVTRLLAKLPLNPA-MALALSRINRSGAASGLQFGALALSL 471
           +G     V +FA+L+ ++V V R        P  + LA  +I+   A + +Q  ALA+ L
Sbjct: 430 VGGFAGAVAVFALLSWLAVKVLRRSVNETTAPRWLVLATRQISARPAYAVVQVSALAVGL 489

Query: 472 MLLAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMR 531
           + L ++ L+RTDL++ W++  P +APN F +N+   +  ++  +L  A + +   YP++R
Sbjct: 490 LALVLLVLLRTDLVASWRQATPPDAPNRFVINVMPDQSEAFQKSLRDAGVGKFDWYPMIR 549

Query: 532 GRLTHINGQEAKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEW--QSQNGVSVEQ 589
           GRL  IN +         + +   + RE NL+ + + P +N I  G+W   ++N VSVE+
Sbjct: 550 GRLVAINDKPVTPDDYTEDRAKRLVDREFNLSNSVEAPAHNSITAGKWTPDAKNEVSVEE 609

Query: 590 EVASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLI 649
            +A  LGLKLGD L F I      A++ ++R+V+W  +  NF+ +++   + ++PV+Y+ 
Sbjct: 610 GLAETLGLKLGDMLRFDIGGMQNDARITSLRKVDWGSLHANFFVMYTVASLADVPVTYMG 669

Query: 650 SFRIQPEHDALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLI 709
           +FR  PE       L R +P V+ +D+     ++Q +L Q++ +V  L    + AG++++
Sbjct: 670 AFR-APETRGFDNALVRSYPNVTNVDMSATINQVQRVLDQVIRAVEFLFGFTLAAGLVVL 728

Query: 710 FTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADAVVAAVMK 769
           F  +  +  +R +E  + R +GA    +     AE   + L+ G +AS+ A  +  A+ +
Sbjct: 729 FAAVTATREERAREFAVMRAVGARASLLRQVQRAELAGVGLLAGFLASIVASVIGWALAR 788

Query: 770 WGFSLT 775
           + F  +
Sbjct: 789 YVFEFS 794