Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., ABC transporter, fused permease protein from Sphingobium sp. HT1-2

 Score =  229 bits (585), Expect = 4e-64
 Identities = 191/774 (24%), Positives = 371/774 (47%), Gaps = 35/774 (4%)

Query: 31  VALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSGNPLPESLLTLTAQQASQTS 90
           V L L + ++ A+ +L   +   I  +G+  L  D        + ++       +  +TS
Sbjct: 29  VCLFLGVMTLAAIGSLTSAITGEISVRGQMILGGDVEIAMTQRVMDARDQQAIARLGRTS 88

Query: 91  QMTRFATMAFSDQGMQ----LVTVKAVDSAYPLRGEMRLSDGQQTFNHVASNQLWLEPRV 146
           +  R   M     G +    L  +K VD AYPL G + L  G+  +  + ++ + + P +
Sbjct: 89  ETVRLRAMVHKSGGREAAPLLTELKGVDDAYPLYGTLALQRGR--YAPLTADHILISPAL 146

Query: 147 KDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPSVYIHASDVDKTGAIQPGS- 205
            +++ + +GD +  G ADF V+  + +EP      F   P   +    +D+TG IQPGS 
Sbjct: 147 AERMAIGVGDALRYGTADFTVAAIIADEPDRVGEGFTLGPVAIVSMDGLDRTGLIQPGSL 206

Query: 206 -RVQFSLFMT--GDDSAIESIKQQVSLTASDRWRDQE-SGSRTNEVFERTQQYLSLTVAI 261
            R ++ L +    D  A+    ++  +     ++D+E +   TN   E   Q+LSL    
Sbjct: 207 YRAKYRLRLPAGADAQALRERLEKRYVEQGWEFKDRERAAPGTNRFIENMGQFLSLIGLA 266

Query: 262 VILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLALQVGLLLVFAVVLGSVIG 321
            + +A   +      Y++ +   +A  K LGA+   ++R   LQ+G++   A++ G V G
Sbjct: 267 ALAIAGIGVSNGVASYLAIKRGALATFKVLGATSADIQRIYLLQIGVVAGLAILAGLVAG 326

Query: 322 VGLESLLRLPLKDLLPDPLPSYGLRPLWIALASSF--LIAVPALGIPLGRLLSVSAVAVM 379
                LL     D+LP   P + L PL +  ++++  LIA+     PL R  +    A++
Sbjct: 327 ALSPPLLVWAAGDMLP-VSPGFHLYPLPLVTSAAYGLLIALIFTLPPLARARTEPVAAIL 385

Query: 380 QP-VTAQTRWQRNLLLI----MVPIVPLLLVYWQNQLIWIVLIGIVVLFAMLAVVSVLVT 434
           +  V  + R  R  L +    +  +V ++L+  +  +    ++G ++   +L +      
Sbjct: 386 RTLVDGRRRIDRRTLALVGGAIALLVAVVLLTARTPMFAAAMLGAIIATLLLLLAMGQGI 445

Query: 435 RLLA-KLP--LNPAMALALSRINRSGAASGLQFGALALSLMLLAIIWLVRTDLLSDWQRT 491
           R LA ++P    P + LAL+ ++R GA +     AL L+L L   +  ++T + ++  RT
Sbjct: 446 RWLARRMPHARRPLLRLALANLHRPGAQTAALTVALGLALTLFVTLAAIQTSIQAEIGRT 505

Query: 492 LPENAPNAFALNISESEKASYLAAL-DTASIERSAAYPIMRGRLTHINGQEAKQYAQNGE 550
           +P+ APN F L++    +A + A +       +    PI+RG +T  +G+      +   
Sbjct: 506 VPKQAPNLFILDMPAGAEAQFRALMAKRVPAAKLNVVPILRGTVTGYSGKRVADLKEK-P 564

Query: 551 ESSDALRRELNLTWAEQLPDYNPILQGEWQSQNG-----VSVEQEVASDLGLKLGDTLTF 605
           E +  LR E  +T++  LP+ + I++G W S++      VS++ + A  L + +GD +T 
Sbjct: 565 EGAWILRGERGVTYSATLPEGSEIVEGRWWSRDYVGPPLVSLDADQAKALDIWVGDRITV 624

Query: 606 MINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLP--VSYLISFRIQPEHDALLGQ 663
            I  + + A+V ++R++ W  M  N+  +FSP  + + P  ++  IS   + +  A+   
Sbjct: 625 SILGREIEARVASLRKINWDTMGFNYVMVFSPSTLASAPHSLTATISLPDKRQEQAVTSA 684

Query: 664 LSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRLSLSQRQQE 723
           L    P  S++++  + +++  LL Q+  ++   A++ VLAGV ++   +      R  +
Sbjct: 685 LLATFPGASVIEVGQVISQVSGLLDQMSGAILAAASVTVLAGVAVLIGAIAAGRQSRSYD 744

Query: 724 IRLYRTLGASRRRVMHTIWAEYGV----MALVGGLVASVSADAVVAAVMKWGFS 773
             + + LGA+R +++     EYGV    +ALV  L+   +A  VV  +  +G++
Sbjct: 745 SVVLKLLGATRGQILGAQALEYGVLAGLLALVALLLGGAAAWYVVVQLFSFGWA 798