Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 832 a.a., putative ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  355 bits (910), Expect = e-102
 Identities = 241/815 (29%), Positives = 416/815 (51%), Gaps = 39/815 (4%)

Query: 4   LPPASLNRRLLRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALT 63
           +P + L    LR  L ++R  ++  +  AL + +A+  A+     R+   +  +  + L 
Sbjct: 1   MPLSRLCGLALRQLLRDVRASEVRVLFFALLVAVAASTAIGYFGARLNGAMQLRASEFLG 60

Query: 64  ADTVFVSGNPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRGEM 123
           AD V     P  E  L        + +++  F ++   D G+QL +VKA D AYPLRG++
Sbjct: 61  ADLVLQGSAPAREQQLDAGKALGLRHARVVEFTSVVGGDNGIQLSSVKAADGAYPLRGQV 120

Query: 124 RLSDG----QQTFNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSF 179
           R +      +      A  ++W+EPR+   LG+ IGD++ +G     +S  +  EP  + 
Sbjct: 121 RSAPAPYAEETPGGGPAPGEVWVEPRLLAALGLAIGDSIDVGIKTLRMSRVLTYEPDRAN 180

Query: 180 NPFQQMPSVYIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVS--LTASDRWRD 237
           N +   P V ++ +D++ TG IQPGSRV +     GD  A+   +Q V   L A+ R RD
Sbjct: 181 NFYSLTPRVMMNLADLEATGVIQPGSRVTYRDLWRGDAEALAQYRQAVEKDLAANQRLRD 240

Query: 238 QESGSRT-NEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRR 296
              G++       + ++YL++   + +L+A   + L+   Y + R    A+L+ LG SR 
Sbjct: 241 TRDGNQQIGGALGKAERYLNMASLVAVLLAGVAVALSASRYAARRLDASALLRCLGLSRH 300

Query: 297 WLRRWLALQVGLLLVFAVVLGSVIG-VGLESLLRLPLKDLLPDPLPSYGLRPLWIALASS 355
                  LQ+ +L + A + G+++G +    L RL L  LLP  +P+ G+ P    + + 
Sbjct: 301 QALGLYCLQLAMLGLVAALAGALLGWLAQLGLFRL-LHGLLPSVVPAGGIVPALAGIGTG 359

Query: 356 FLIAVPALGIP-LGRLLSVSAVAVMQ----PVTAQTRWQRNLLLIMVPIVPLLLVYWQNQ 410
            L+A+    +P +  L  V  + V++    P+ A + W    L+    ++ L L+ W+  
Sbjct: 360 -LVALAGFALPPIAALGQVPPLRVLRRDLLPIPASS-W----LVYGAALLALGLIMWRLS 413

Query: 411 LIWIV--------LIGIVVLFAMLAVVSVLVTRLLAKLPLNPAMALALSRINRSGAASGL 462
           L  ++        L+  ++L  +L +    + +LLA  PL     L L ++ R   A+  
Sbjct: 414 LDLLLTFALLGGGLVAALLLGGLLLLGLRSLRQLLAGAPLT--WRLGLGQLLRHPTAAAG 471

Query: 463 QFGALALSLMLLAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIE 522
           Q  A  L L+ +A++ L+R +LL  WQ  LP++APN FALNI   ++  ++  L   +  
Sbjct: 472 QALAFGLILLAMALVALLRAELLDTWQAQLPKDAPNHFALNILPDDREPFIQHLHQVNAA 531

Query: 523 RSAAYPIMRGRLTHINGQEAKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEW--- 579
            +  YP+  GRL  IN +  +Q          A++R+L+LTWA +LP+ N +  G W   
Sbjct: 532 SAPLYPVTPGRLVQINEKPVQQVVSKDSAGERAVQRDLSLTWAAELPEGNVLTAGSWWPA 591

Query: 580 ----QSQNGVSVEQEVASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIF 635
                   GVSVE E+AS L L++GD LTF I  Q   A+V+++R V W   +PNFY IF
Sbjct: 592 LPADNDIPGVSVEAELASSLKLQMGDLLTFDIGGQQRQARVSSLRNVHWDSFQPNFYMIF 651

Query: 636 SPDVVQNLPVSYLISFRIQPEHDALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVT 695
            P  +Q LP +YL SF + P HD  +  LSR  P V+++ +  +  +++++L Q+  +V 
Sbjct: 652 QPGTLQGLPTTYLTSFYLAPGHDLDVVALSRAFPAVTILQVDALLDQLRSILAQVTLAVE 711

Query: 696 VLAALGVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLV 755
            +    + AG+ ++F  L+ +L +R ++  L R LGA+R  ++     E+G++    GL+
Sbjct: 712 YVLLFVLAAGLAVLFAGLQATLDERIRQGALLRALGAARPLLVKARRIEFGLLGAASGLL 771

Query: 756 ASVSADAVVAAVMKWGFSLTPSLHMALWFVLPALT 790
           A+V  + +   + ++ F L  S H   W ++  LT
Sbjct: 772 AAVGCELITWVLYRYAFDLQWSPHP--WLLVLPLT 804