Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  439 bits (1129), Expect = e-127
 Identities = 265/784 (33%), Positives = 437/784 (55%), Gaps = 20/784 (2%)

Query: 13  LLRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSGN 72
           + RW   E R   L  V +AL+L +A + AL  ++ RME+ + +Q R+ +  D    S  
Sbjct: 2   IARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSSR 61

Query: 73  PLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRGEMRLSDGQQTF 132
            +P++ L    ++  +  +   FATM F+    QL  VKAVD  YP+ G+++ +      
Sbjct: 62  EVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAVDDIYPMYGDLQTNPPGLK- 120

Query: 133 NHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPSVYIHA 192
               +  + L PR+   L +  GD + +GDA   ++GEV++EP   FNPFQ  P + ++ 
Sbjct: 121 --PQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAPRLMMNL 178

Query: 193 SDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQV--SLTASDRWR--DQESGSRTNEVF 248
           +DVDKTGA+QPGSRV +     G+++ ++  ++ +   L    RW   +Q+ G+    + 
Sbjct: 179 ADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLKPEQRWYGLEQDEGALGRSM- 237

Query: 249 ERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLALQVGL 308
           ER+QQ+L L+  + +L+A   + +   HY  +R   +A+LK+LGA R  LR+ +  Q  +
Sbjct: 238 ERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLRKLIVGQWLM 297

Query: 309 LLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYGLRPLWIALASSFLIAVPALGIPLG 368
           +L  + V G  IG+  E++L + LK +LP  LP   L P   AL +  +I++     P  
Sbjct: 298 VLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYR 357

Query: 369 RLLSVSAVAVMQPVTAQTRWQRNLLLIMVPIVPLLLV---YWQNQLIWIVLIGIVVLFAM 425
            LL+   + V++       W     L +V +V +LL+      + L+W VL G VVL  +
Sbjct: 358 LLLATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALL 417

Query: 426 LAVVSVLVTRLLAKLPLNPA-MALALSRINRSGAASGLQFGALALSLMLLAIIWLVRTDL 484
             V+  ++  +L ++ L    + LA+SR+ R   ++  Q  A +LS MLLA++ ++R DL
Sbjct: 418 CGVLGWMLLNVLRRMTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDL 477

Query: 485 LSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMRGRLTHINGQEAKQ 544
           L  WQ+ LP  +PN F +NI+  + A   A L    I   + YP++R RLT IN +  + 
Sbjct: 478 LDRWQQQLPPESPNYFLINIATEQVAPLKAFLAEHQIVPESFYPVVRARLTAINDKPTE- 536

Query: 545 YAQNGEESSDALRRELNLTWAEQLPDYNPILQGEWQSQ-NGVSVEQEVASDLGLKLGDTL 603
               G E  +AL RELNLTW    PD+NPI+ G W  + + VS+E+ +A  L + LGDT+
Sbjct: 537 ----GNED-EALNRELNLTWQNTRPDHNPIVAGNWPPKADEVSMEEGLAKRLNVALGDTV 591

Query: 604 TFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLISFRIQPEHDALLGQ 663
           TFM ++Q   A+V ++R+V+W  ++PNFYFIF    +   P S+L SFR +   + +L Q
Sbjct: 592 TFMGDTQEFRAKVTSLRKVDWESLRPNFYFIFPEGALDGQPQSWLTSFRWE-NGNGMLTQ 650

Query: 664 LSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRLSLSQRQQE 723
           L+RQ PT+SL+DI  +  ++  +L Q+  ++ V+  L    G+LL+   +++ + QR QE
Sbjct: 651 LNRQFPTISLLDIGAILKQVGQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQE 710

Query: 724 IRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADAVVAAVMKWGFSLTPSLHMALW 783
           + ++RTLGA ++ +  T+W E+ ++  V GLVA++ A+  +A +    F         LW
Sbjct: 711 LVVWRTLGAGKKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLW 770

Query: 784 FVLP 787
            VLP
Sbjct: 771 IVLP 774