Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  206 bits (524), Expect = 4e-57
 Identities = 200/831 (24%), Positives = 368/831 (44%), Gaps = 66/831 (7%)

Query: 11  RRLLRWSLSEIRHGQ--LWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVF 68
           R   R +  EIR G    +     ++L   +I A+ ++++ +   I  +G+  L  D  F
Sbjct: 13  RNAARLARREIRGGLRGFYIFLACISLGTGAIAAVNSVSRAVTSAIATEGQSILAGDVRF 72

Query: 69  VSGNPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQ--LVTVKAVDSAYPLRGEM--- 123
              N    +            +  T   +MA    G +  L  VKA+D AYPL G     
Sbjct: 73  ELRNREATAEERSYLDGLGTVAVSTGLRSMARLADGSEQTLTEVKAIDGAYPLFGTFVAD 132

Query: 124 -------RLSDGQQTFNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPG 176
                   L+    T+  VA+      P + ++LG+ +GD + +G+A   ++G V++EP 
Sbjct: 133 PNRPLGELLAGSGDTYGAVAA------PLLLERLGIKVGDEILLGNAKLRLTGTVVDEPD 186

Query: 177 LSFNPFQQMPSVYIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVSLTA----- 231
              + F   P + +    +  +G IQ GS V+ +  +   D A  +     +  A     
Sbjct: 187 ALSDGFGFAPRLVVSRDALFASGLIQTGSLVEHAYKIKLSDPAARATMTDAANKAFPQAG 246

Query: 232 -SDRWRDQESGSRTNEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKS 290
            S R  D+ + S T  V  R  Q+L+L     +++    +    + ++ ++  TIA LK 
Sbjct: 247 WSIRTSDRAAPSLTENV-NRFSQFLTLVGLTALIVGGVGVANAVRAFLDSKRTTIASLKC 305

Query: 291 LGASRRWLRRWLALQVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYGLRPLWI 350
           LGA    +      Q+  +    +V+G V+G     +    L+ +LP P       P  +
Sbjct: 306 LGAPASVVTMTYLFQIAFIAAVGIVIGLVVGAVAPLVAMRFLEGVLPVP-EGLAFYPGAL 364

Query: 351 ALASSF-LIAVPALGI-PLGRLLSVSAVAVMQ------------PVTAQTRWQRNLLLIM 396
            LA+ F L+   A  I PLG+   V A A+ +            P  A T       L++
Sbjct: 365 GLAALFGLLTTLAFAIVPLGQAREVPATALFREQGFEEGSWPSWPYLAATG------LLL 418

Query: 397 VPIVPLLLVYWQNQLIWIV-LIGIVVLFAMLAVVSVLVTRLLAKLPL--NPAMALALSRI 453
             +  L +   +++ I  V L  I   F +L +V+  V  +  + P   + A+ LA+  I
Sbjct: 419 AALAALAIFSAEDRFIASVFLAAIAFAFVVLRLVASGVKAIAKRSPRVHSAALRLAIGNI 478

Query: 454 NRSGAASGLQFGALALSLMLLAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYL 513
           +R GA +     +L L L LL  + L+  +L  +   +LPE APN F ++I  SE   + 
Sbjct: 479 HRPGALTPSVVLSLGLGLTLLVTLTLIDGNLRRELTDSLPEKAPNFFFVDIQGSEVQGFR 538

Query: 514 AALDTASIERSAA-YPIMRGRLTHINGQEAKQYAQNGEESSDALRRELNLTWAEQLPDYN 572
             +   + E +    P++RGR+  +NG +  +  +        LR +  +T++E  P+  
Sbjct: 539 DLVKREAPEGTLTEVPMLRGRIMALNGTDVTKM-EVPPGGRWLLRGDRGITYSENRPENA 597

Query: 573 PILQGEW-----QSQNGVSVEQEVASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREM 627
            + +G W       +  VS   + A +LGLK+GD +T  +  ++++A++  +R VEW  +
Sbjct: 598 TLTEGTWWEPDYSGEPLVSFAAKEAGNLGLKIGDKVTVNVLGRSITAKIANLRNVEWESL 657

Query: 628 KPNFYFIFSPDVVQNLPVSYLISF----RIQPEHDALLGQLSRQHPTVSLMDIRTMGAKI 683
             NF  +FSP+  +  P ++L +         +   +L  ++  +PT++ + ++     +
Sbjct: 658 SINFVMVFSPNTFRGAPHAWLATLADPSATASDEGRILRAVTNTYPTITSVRVKDALDVV 717

Query: 684 QALLTQIVWSVTVLAALGVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWA 743
             L+ Q+  ++   AA+ ++A VL++   L      R  +  + +TLG +R  ++     
Sbjct: 718 NRLVGQLATAIRAAAAVALIASVLVLAGALAAGNRARTHDAVILKTLGGTRNLLIRAFSY 777

Query: 744 EYGVMALVGGLVA----SVSADAVVAAVMKWGFSLTPSLHMALWFVLPALT 790
           EY ++ L   + A     VSA  VVA +MK   S  P + +    +   +T
Sbjct: 778 EYMMLGLATAVFALFAGGVSAWFVVARIMKLPSSFLPDVAIGTLVIALVMT 828