Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  176 bits (446), Expect = 2e-48
 Identities = 107/314 (34%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 162 GDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFAHEVKESEV 221
           GDLT+R+     +DE G +  A +  MD L  L+  ++ ++ T+   A     +  ++  
Sbjct: 254 GDLTARIKVE-SQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASH 312

Query: 222 QIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQ 281
           ++       D V  A+ EM+A+A EV++ +    +  E    Q+  +Q+ V  AI  I +
Sbjct: 313 KMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGE 372

Query: 282 LSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVV 341
           L   + Q S++V  L+  A +I  V+  I  I+EQTNLLALNAAIEAARAGEQGRGFAVV
Sbjct: 373 LVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVV 432

Query: 342 ADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTE-QTVSQAHTSSQLVS--EVGNDV 398
           ADEVR+LASRTQ++T EI  M+  L    Q ++K  +   +SQ       +   ++   +
Sbjct: 433 ADEVRSLASRTQNSTKEIGEMLNALH---QGVSKAVQSMNISQERGEKTALESVQIKESL 489

Query: 399 QAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQGVSEIT 458
             I+ +  LI+D+ +Q +++A +QS+VA DI+  L  I+   N L    +QT    + ++
Sbjct: 490 AGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLS 549

Query: 459 QATRNLGEILARYR 472
            + + +G ++  ++
Sbjct: 550 HSGQQMGTLVGHFK 563



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 38/230 (16%), Positives = 81/230 (35%), Gaps = 45/230 (19%)

Query: 148 ALWVLYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRD 207
           A+  +  T +++A    ++         +       ++ A+D + EL+  V Q SA + D
Sbjct: 327 AVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGD 386

Query: 208 TAM-----------------------------------------TFAHEVKESEVQIQNQ 226
            +                                            A EV+    + QN 
Sbjct: 387 LSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNS 446

Query: 227 YSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQLSRYI 286
              +  +  A+ +  + A +    SQ   E+T  ++ Q++ S   + KA+  I  +    
Sbjct: 447 TKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSLIHDMGIQT 506

Query: 287 A----QASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAG 332
           A    Q S+  E +N N   I  ++  ++   +QT  ++ + +    + G
Sbjct: 507 ASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMG 556