Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  330 bits (845), Expect = 9e-95
 Identities = 170/374 (45%), Positives = 245/374 (65%), Gaps = 2/374 (0%)

Query: 2   SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
           S+   +FS LGL   ++  L+E     PTPIQ +AIP VL G+D++  AQTGTGKTAAF 
Sbjct: 22  SQSLTSFSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFA 81

Query: 62  LPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSM 121
           LP++ R +  P  R  + K +RALVL PTREL+ Q++D+ + + +   + +    GG  M
Sbjct: 82  LPILDRLVRHP--RRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHARISVTLAIGGVPM 139

Query: 122 KVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181
             Q+  L  GVD+L+ATPGRL+D     ++ L +VEVLVLDEAD+MLDMGF+  ++ ++R
Sbjct: 140 GRQIRALARGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVR 199

Query: 182 RLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKREL 241
           RL   R +LFFSAT    I  +A  ++ DP+ V VTP   TA+ V+Q V  VDK  K +L
Sbjct: 200 RLPHKRHSLFFSATMPPAIAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVDKPNKGQL 259

Query: 242 LSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGK 301
           L+ ++ ++   + LVF +T+ G+D +   L   GI A +I+G+KSQ  R + L  F+ GK
Sbjct: 260 LAEVLSTEEIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGK 319

Query: 302 VRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
           +R LIATD+AARG+D+  +  V+NYD+P   E YVHRIGRT RAG  G+A+S   H+E+ 
Sbjct: 320 IRTLIATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERA 379

Query: 362 QLEAIERLLNTRLP 375
            L++IERL+  ++P
Sbjct: 380 YLKSIERLIKLQIP 393