Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  315 bits (807), Expect = 2e-90
 Identities = 182/405 (44%), Positives = 252/405 (62%), Gaps = 10/405 (2%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++FS+LGL  ++L  +++ G   PTPIQ QAIPHVL  +DVL  AQTGTGKTAAF LP++
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
              +EQ     A ++  R L+L PTRELA QV ++   Y K ++L +  + GG S   Q 
Sbjct: 61  T-LLEQG---RARARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFGDQD 116

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
             L  GVD+LIATPGRLLDH     L L  +EVLV+DEADRMLDMGF+PD++R+ + +  
Sbjct: 117 TKLVRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPF 176

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKK--RKRELLS 243
            RQTLFFSAT   +I+ +  + +  P+ V+V+   STA TV Q +    ++   KRE+L 
Sbjct: 177 TRQTLFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKREVLR 236

Query: 244 YLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
            LI S +N Q  ++F   ++    L   L+  G  AV+++GD  Q AR KALD+F+ G+ 
Sbjct: 237 ELIRSCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEA 296

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
             L+A+DVAARGLDI  +  V NYD+P  +EDYVHRIGRTGRAG AG A ++++H +   
Sbjct: 297 TLLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKS 356

Query: 363 LEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKL 407
           L AIE+L+   +P       +  P         R  GR   KR++
Sbjct: 357 LSAIEKLIGNPIPWHGAPLGDAPPASERRG---RDDGRLRGKRRM 398