Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  372 bits (954), Expect = e-107
 Identities = 205/404 (50%), Positives = 267/404 (66%), Gaps = 2/404 (0%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           +TF+ LGL   LL  L  LG   PTP+Q QAIP VL G+D++A AQTGTGKTA F +PL+
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
           Q    +  +  ANS   RAL+L PTRELA+QV  S+  YA+   L   AVYGG S+  Q+
Sbjct: 61  QLLTMEGPKVAANSA--RALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQM 118

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
             LR GVDIL+ATPGRL+D     +L L +++ LVLDEADRMLD+GF  +L  + R L  
Sbjct: 119 MKLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPK 178

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
            RQTL FSATF   I+ +A +++ DP+ ++V+P N  A TV+Q V PVDKKRK EL  +L
Sbjct: 179 KRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHL 238

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           +    W+QVLVF KTR G DAL ++L+  GI A  I+GDK Q  RQ+ALD FK+ +V+ L
Sbjct: 239 MRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQIL 298

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATDVAARGLDI  L  VVN+D+P  AEDY+HRIGRTGRAG  G A+SL+  DE   L A
Sbjct: 299 VATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSA 358

Query: 366 IERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKA 409
           IE L    L +   + FEP   V + ++  +   +  + +K K+
Sbjct: 359 IEMLTRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPKKPKKPKS 402