Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  357 bits (917), Expect = e-103
 Identities = 191/417 (45%), Positives = 278/417 (66%), Gaps = 13/417 (3%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           + F +L L   +L  + E G   PTPIQ QAIP VL G D+L GAQTGTGKTAAF LP++
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 66  QRFIEQPWQREANSK----EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSM 121
            +       R A +K     IRALVL PTRELA QV +S++ Y K  +L    ++GG  M
Sbjct: 61  HKL---SMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGM 117

Query: 122 KVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181
             Q++ L+ GVDIL+ATPGRLLD      L L +V++L+LDEADRMLDMGF+ D++++L 
Sbjct: 118 NPQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILA 177

Query: 182 RLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKREL 241
            +   +Q+L FSATF   I+ +A  ++++P  +QVTP N+T + + Q+++PV + +K+ L
Sbjct: 178 LVPKEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKAL 237

Query: 242 LSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGK 301
           L+++I    W QVLVFT+T+ G++++AE L  +GI+A++++G+KSQ AR +AL  FK+G 
Sbjct: 238 LAHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGD 297

Query: 302 VRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQP 361
           +RAL+ATD+AARG+DI +L  VVNY++P  +EDYVHRIGRTGRAG +G AVS +  DE+ 
Sbjct: 298 IRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEG 357

Query: 362 QLEAIERLLNTRLPQEWLKGFEP------SPVVHEENSPRRSAGRSSEKRKLKAQLK 412
            ++ IER     +P + ++GF P       P+     +    AGR   +  ++A  K
Sbjct: 358 FMQEIERFTKQTIPVQIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAK 414