Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  327 bits (837), Expect = 6e-94
 Identities = 195/423 (46%), Positives = 259/423 (61%), Gaps = 12/423 (2%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           F  LGL   L++  +E G A PT IQ  AIP +LQG+DV   AQTG+GKTAAF LPL+QR
Sbjct: 3   FDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLLQR 62

Query: 68  F-IEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGT--ELKIVAVYGGTSMKVQ 124
              E+P     +++ +RALVLVPTRELA QV ++L++ A+     LKIV  +GG S+  Q
Sbjct: 63  LGAERP---PGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQ 119

Query: 125 LNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLS 184
           +  LRGG DI++ATPGRLLD A   +L L  V  LVLDEADR+ D+GF  +L R+L  L 
Sbjct: 120 MMSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLP 179

Query: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSY 244
             RQ L FSATF   I+A+A   +RDP  + V     T   + Q V  VD  R+ +LL +
Sbjct: 180 RQRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRH 239

Query: 245 LIGSKN--WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
           L+      W +VLVF  T+  +  +AE+L  +GI AV  +GD +QG R   L  FK  + 
Sbjct: 240 LLKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRW 299

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
             +IATD+AARG+DIAQL  V+NYD+P    DY+HRIGRTGRAG +GLA+S +S   +  
Sbjct: 300 DVVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAH 359

Query: 363 LEAIERLLNTRLPQEWLKGFEPS----PVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRG 418
              IE+     LP+E ++GFEP+    PVV    +      R S+K KL+A     A R 
Sbjct: 360 FRLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSKKDKLRAAAAKAAARE 419

Query: 419 KKA 421
           + A
Sbjct: 420 EVA 422