Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  316 bits (809), Expect = 1e-90
 Identities = 172/420 (40%), Positives = 263/420 (62%), Gaps = 10/420 (2%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           F++LGL   ++  L+    A PTPIQQ+AIP +L+G+D+   AQTGTGKTAAF LP +  
Sbjct: 3   FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
           F   P  +    K  R LVL PTRELA Q+  S + Y +   L +  V+GG  +  Q+  
Sbjct: 63  FARNP--KPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           L  GVDI++ATPGRLLD    ++  +   E+ VLDEAD+M+DMGF+  L+R+ + L   R
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247
           Q LFFSAT   +I+A+A + + DP++V V P ++TAE V+Q +  V++  K+ LL  ++ 
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240

Query: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307
           ++   + L+FT+T+ G+D +   L+  GI+A +I+G+KSQ  R  AL  F+ G  + L+A
Sbjct: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300

Query: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367
           TD+AARG+D++ +  V+N+++P   E YVHRIGRT RAG  G+A+S ++ DE+P L+AIE
Sbjct: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360

Query: 368 RLLNTR-----LPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRGKKAR 422
           R    +     LP+ +L+     P   +    RR   +S  ++  +A+ +   Q G+KA+
Sbjct: 361 RATKVKPEIVPLPENFLEAVRNLP---KPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQ 417