Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  365 bits (936), Expect = e-105
 Identities = 197/421 (46%), Positives = 275/421 (65%), Gaps = 6/421 (1%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F+ LGL   L+  +   G   PTP+QQ+AIP VLQG+D++  AQTGTGKT  F LP++
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 66  QRFIE--QPWQREANS-KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122
           +R      P + + +  ++ R LVL PTRELA QV DS + YA+   L    ++GG  M 
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 123 VQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
            Q+  +  GVD+L+A PGRLLD A    + L  VE+LVLDEADRMLDMGF+ D+++VL R
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELL 242
           L   RQ L FSATF   I  +A +++ +P  ++VTP N+T E ++Q VY +    KR LL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
           ++LI    W+QVLVFT+T+ G++ LAE L+  G+ A +I+G+KSQ AR KAL DFKA  V
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
           R L+ATD+AARGLDI QL  VVN+++P   EDYVHRIGRTGRAG +G A+SL++ DE+  
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 363 LEAIERLLNTRLPQEWLKGFEPSPVVHEENSPR---RSAGRSSEKRKLKAQLKIHAQRGK 419
           L++IER+   R+    L GF+ S V  E+   R   ++ GR    ++ + +       G+
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR 420

Query: 420 K 420
           K
Sbjct: 421 K 421