Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  370 bits (951), Expect = e-107
 Identities = 207/413 (50%), Positives = 268/413 (64%), Gaps = 20/413 (4%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           + F++LGL   LL TL +L    PTP+Q +AIP VL G+D++A AQTGTGKTA F LP++
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
           QR   +  +  +NS  IRALVLVPTRELA+QV ++++ YA+   L   AVYGG S+  Q+
Sbjct: 61  QRLALEGEKVASNS--IRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQM 118

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
             LR GVD+L+ATPGRLLD     ++   +V+ LVLDEADRMLD+GF  +LQ V   L  
Sbjct: 119 MRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPR 178

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
            RQTL FSATF  +I+ +A   + DP+ ++V+P N+TA +V+Q + PVDKKRK +L  +L
Sbjct: 179 KRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHL 238

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           +  + W+QVLVF KTR G D L E L  +G+ A  I+GD+ Q  RQ+ALD FKA +V+ L
Sbjct: 239 LRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVL 298

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATDVAARGLDI  L  VVN D+P  AEDYVHRIGRTGRAG  G A+SL+  DE   L A
Sbjct: 299 VATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAA 358

Query: 366 IERLLNTRLPQEWLKGFEP------------------SPVVHEENSPRRSAGR 400
           IE L    LP+     F P                   P   +ENS +R  GR
Sbjct: 359 IEVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGR 411