Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  342 bits (876), Expect = 2e-98
 Identities = 182/407 (44%), Positives = 261/407 (64%), Gaps = 12/407 (2%)

Query: 4   LSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP 63
           +++ FS+LGL   LL  L   G   PTPIQ+Q+IPH+LQG DVL  AQTGTGKTA+F LP
Sbjct: 1   MTVLFSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALP 60

Query: 64  LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKV 123
           L+QR  +  +++ A  K  R LVL PTRELA QV  S + Y     L+   V+GG  M  
Sbjct: 61  LLQRLDQ--FKKRAMPKSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVP 118

Query: 124 QLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
           Q+  + GGVD+L+ATPGRLLD     ++ L  VE LVLDEADRMLDMGF+  +++++  +
Sbjct: 119 QIKTMAGGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALV 178

Query: 184 SPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLS 243
              RQT+ FSAT    I  +A  ++  P+ V+VTP +ST + + Q V  VD++ KR LL+
Sbjct: 179 PKQRQTVLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLT 238

Query: 244 YLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVR 303
            ++  K+  + LVFT+T+ G++ + E L+  GI A +I+G+KSQGARQKAL DF+ G+++
Sbjct: 239 DILAGKDVGRALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIK 298

Query: 304 ALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQL 363
           AL+ATD+AARG+D+  +  V+N+++P + E YVHRIGRT RAG +G+A+SL   DE   L
Sbjct: 299 ALVATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDEVAYL 358

Query: 364 EAIERLLNTRLPQEW----------LKGFEPSPVVHEENSPRRSAGR 400
             IE+ +   +P ++           +G    P   +   P R  G+
Sbjct: 359 RDIEKTIRQAIPVDYEQPYHAAHIATRGLPGGPRATKPPQPHRGGGK 405