Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  407 bits (1047), Expect = e-118
 Identities = 208/387 (53%), Positives = 283/387 (73%), Gaps = 3/387 (0%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F  LGL+  +L  ++E G   PTPIQQQAIP VL+G+D++A AQTGTGKTA F LPL+
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 66  QRFI-EQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQ 124
           Q  I  QP  +    + +RAL+L PTRELA Q+ ++++ Y+K   ++ + V+GG S+  Q
Sbjct: 61  QHLITHQPHAK--GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118

Query: 125 LNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLS 184
           +  LRGGVD+L+ATPGRLLD  H  ++ L ++E+LVLDEADRMLDMGF+ D++RVL +L 
Sbjct: 119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLP 178

Query: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSY 244
             RQ L FSATF   IKA+A +++R+P+E++V   N+ +E V Q V+ VDKKRKRELLS 
Sbjct: 179 AKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238

Query: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
           +IG  NWQQVLVFT+T+ G++ LAE+L  DGI++ +I+G+KSQGAR +AL DFK+G +R 
Sbjct: 239 MIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298

Query: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLE 364
           L+ATD+AARGLDI +L  VVNY++P   EDYVHRIGRTGRA   G A+SL+  DE   L 
Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358

Query: 365 AIERLLNTRLPQEWLKGFEPSPVVHEE 391
            IE+LL   +P+    G+EP P +  E
Sbjct: 359 DIEKLLKKEIPRITTPGYEPDPSIKAE 385