Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola ME23

 Score =  299 bits (766), Expect = 1e-85
 Identities = 161/377 (42%), Positives = 235/377 (62%), Gaps = 8/377 (2%)

Query: 1   MSELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAF 60
           M+E   +F+ LGL + +L+ LSELG   P+PIQ + IPH+L G+DVL  AQTG+GKTAAF
Sbjct: 1   MAEFETSFASLGLSAPILSALSELGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 61  GLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGT 119
            LPL+          +A  K  + LVL PTRELA QV ++   ++K  + + +VA+YGG 
Sbjct: 61  SLPLLNNI-------KAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQ 113

Query: 120 SMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRV 179
              VQL  LR G  I++ TPGRLLDH    +L L  +  LVLDEAD ML MGF+ D++ +
Sbjct: 114 RYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENI 173

Query: 180 LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKR 239
           + ++    QT  FSAT    I+ +  R M+DP EV++  S +T   + Q  + V   RK 
Sbjct: 174 MAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMRKN 233

Query: 240 ELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299
           E L   + ++++   ++F +T+  +  +AE L+  G  + ++NGD +Q  R++ L+  K 
Sbjct: 234 EALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKD 293

Query: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
           G++  LIATDVAARGLD+ ++  VVNYD+P  +E YVHRIGRTGRAG AG A+  + + E
Sbjct: 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353

Query: 360 QPQLEAIERLLNTRLPQ 376
           +  L  IER +   +P+
Sbjct: 354 RRLLRNIERTMKLTIPE 370