Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  295 bits (755), Expect = 2e-84
 Identities = 170/415 (40%), Positives = 253/415 (60%), Gaps = 18/415 (4%)

Query: 7   TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
           TFS LGL  ++L+ +++ G   PTPIQ  AIP  L+ +D+   AQTGTGKTA+F LP++ 
Sbjct: 3   TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62

Query: 67  RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
             +E+     A ++  R L+L PTRELA QV ++ + Y K  +L +  + GG S + Q  
Sbjct: 63  -LLEKG---RARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDR 118

Query: 127 HLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186
            L  G D+LI TPGRLLDH     L +  VE+LV+DEADRMLDMGF+PD++R+ + +   
Sbjct: 119 KLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFT 178

Query: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKK--RKRELLSY 244
           RQTLFFSAT   +I+ +A R +++P  ++V   +STA+TV Q +     K   KR +L  
Sbjct: 179 RQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRD 238

Query: 245 LIGSK--NWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
           L+ ++    +  ++F   ++    L   L   G    +++GD  Q +R   L +F+ G++
Sbjct: 239 LVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQL 298

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
             L+A+DVAARGLDI  +  V N+D+P  AEDYVHRIGRTGRAG +G A +L++  +   
Sbjct: 299 TLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKY 358

Query: 363 LEAIERLLNTRLPQEWLKG---FEPSPV-VHEENSPRRS----AGRSSEKRKLKA 409
           L+AIE+L+  ++  EWL G     P+P+   E NS RR     +GR  ++ +  A
Sbjct: 359 LDAIEKLIAEKI--EWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDA 411