Pairwise Alignments

Query, 243 a.a., arginine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., amino acid ABC transporter from Pseudomonas simiae WCS417

 Score =  151 bits (382), Expect = 1e-41
 Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 11/246 (4%)

Query: 2   KKILLASLIGLVSASAAAQQEIKFVMEATYAPFEYMDENNQIQGFDVDLANALCKQLEA- 60
           KK LLA+ + +  ++ A  + +K  +EA Y PF   D +  + GFD D+ +ALC +++  
Sbjct: 5   KKFLLAAAVSMAFSATAMAETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVE 64

Query: 61  KCSFHNQAFDSLIPALKFKRYDAAISAMDITEARLEQVNFSNPYYDNSAAFVS---LAGK 117
           KC  +   +D +IPAL  K++D  +S++ ITE R   V+F++PYY N   F++    A  
Sbjct: 65  KCEVYVSDWDGIIPALNAKKFDFLVSSLSITEERKAAVDFTDPYYSNKLQFIAPKATADF 124

Query: 118 VADQAALKGKRVGVQNGSTHQSFLLEQLSDVVAVPYSSYQDAFIDMKNGRIDSVFGDTAV 177
             D A LKGK +G Q  +   ++L ++L D  A  Y + ++A++D+ +GR+D +  D  V
Sbjct: 125 KTDAAYLKGKVIGAQRATLAGTYLEDKLPDTEAKLYDTQENAYLDLTSGRLDGILADKYV 184

Query: 178 VAEWFKGDNNLAY--VGERVTNAQYFGNGFGIAVNKDNQALLDQLNAALEAVKENGEYAA 235
             EW K  +  AY   G+ V  +    +  GIAV K    L ++LN AL  +K +G Y  
Sbjct: 185 QYEWLKSKDGSAYEFKGDPVVES----DKIGIAVRK-GDPLRERLNKALAEIKADGTYKK 239

Query: 236 IFNKYF 241
           I +KYF
Sbjct: 240 INDKYF 245