Pairwise Alignments

Query, 243 a.a., arginine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., histidine/lysine/arginine/ornithine transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  139 bits (350), Expect = 6e-38
 Identities = 83/253 (32%), Positives = 135/253 (53%), Gaps = 12/253 (4%)

Query: 1   MKKILLASLIGLVSASAAAQ-----QEIKFVMEATYAPFEYMDENNQIQGFDVDLANALC 55
           MKK++L+  + L  +SA A      Q I+   + TYAPFE  +   ++ GFD+DLA  LC
Sbjct: 1   MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELC 60

Query: 56  KQLEAKCSFHNQAFDSLIPALKFKRYDAAISAMDITEARLEQVNFSNPYY--DNSAAFVS 113
           K++  +C+F     D+LIP+LK K+ DA +S++ ITE R +++ F++  Y  D+      
Sbjct: 61  KRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAK 120

Query: 114 LAGKVADQAALKGKRVGVQNGSTHQSFLLEQLS--DVVAVPYSSYQDAFIDMKNGRIDSV 171
            +       +LKGKRVGV  G+T ++F  E  +   +  V Y    + + D+  GRID+ 
Sbjct: 121 NSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAA 180

Query: 172 FGDTAVVAEWFKGD---NNLAYVGERVTNAQYFGNGFGIAVNKDNQALLDQLNAALEAVK 228
           F D    +E F       +  + G  V + + FG G G+ + K++  L + LN A   ++
Sbjct: 181 FQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMR 240

Query: 229 ENGEYAAIFNKYF 241
            +G Y  +  KYF
Sbjct: 241 ADGTYEKLAKKYF 253