Pairwise Alignments

Query, 243 a.a., arginine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score =  141 bits (356), Expect = 1e-38
 Identities = 83/255 (32%), Positives = 141/255 (55%), Gaps = 16/255 (6%)

Query: 1   MKKILLASLIGLVSASAAAQ-----QEIKFVMEATYAPFEYMDENNQIQGFDVDLANALC 55
           MKK++L+  + L  +SA A      Q+I+   + TYAPFE  +   ++ GFD+DLAN LC
Sbjct: 1   MKKLVLSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNSKGELVGFDIDLANELC 60

Query: 56  KQLEAKCSFHNQAFDSLIPALKFKRYDAAISAMDITEARLEQVNFSNPYYDNSAAFVSLA 115
           K+++A+C++     D+LIP+LK K+ D  +S++ ITE R +++ F++  Y   +  V   
Sbjct: 61  KRIKAQCTYVENPLDALIPSLKAKKIDVIMSSLSITEKRQQEIAFTDKLYAADSRLV--V 118

Query: 116 GKVAD----QAALKGKRVGVQNGSTHQSFLLEQLS--DVVAVPYSSYQDAFIDMKNGRID 169
            K +D      +LKGKRVGV  G+T +++  E  +   +  V Y   ++ + D+  GRID
Sbjct: 119 AKASDIQPTLESLKGKRVGVLQGTTQETYGNEHWAPKGIEIVSYQGQENIYADLTAGRID 178

Query: 170 SVFGDTAVVAEWF---KGDNNLAYVGERVTNAQYFGNGFGIAVNKDNQALLDQLNAALEA 226
           + F D    +E F       +  + G  + + + FG G G+ + K++  L + LN A   
Sbjct: 179 AAFQDEVAASEGFLKTPVGKDYKFGGPSIKDVKLFGVGTGMGLRKEDNELREALNKAFAE 238

Query: 227 VKENGEYAAIFNKYF 241
           ++ +G Y  +  KYF
Sbjct: 239 MRADGTYDKLAKKYF 253