Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  149 bits (377), Expect = 4e-41
 Identities = 85/223 (38%), Positives = 133/223 (59%), Gaps = 5/223 (2%)

Query: 5   GYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPELL 64
           G+  +L+  + +T+ +ALA + +GL L L+ A    +K + ++   T+  TV RGLPELL
Sbjct: 14  GWGSALLAGALVTITLALACIPLGLPLGLLVALAARSKRRWLRTGATVFSTVFRGLPELL 73

Query: 65  VVLFIYFG---STQVLFFITGEF--IEISPFISGVIALSLIFASYASQTLRGALKAVGRG 119
            +L IY+G   + Q +    G    + I+ F++ +IA SL+FA+++S+    A K++ +G
Sbjct: 74  TLLIIYYGCQIAAQRMLAAMGYQGEVTINTFVAAMIAFSLVFAAFSSEVWLSAFKSLSKG 133

Query: 120 QREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQL 179
           Q EAA+ LG+P      ++VLPQ  R ALPGL N WL LLKDT+LVS I + DL++Q  L
Sbjct: 134 QFEAATMLGLPKGTTLRKVVLPQLTRIALPGLSNNWLSLLKDTSLVSTISLVDLMRQTSL 193

Query: 180 TSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNKFSIQGMS 222
             + T E   +YA A   YL  + ++ RV   ++  FS   +S
Sbjct: 194 AVSVTKEPMLFYAVACFGYLFFSALSGRVFNFLERYFSRHQLS 236