Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  167 bits (422), Expect = 2e-46
 Identities = 90/226 (39%), Positives = 143/226 (63%), Gaps = 6/226 (2%)

Query: 3   LTGYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPE 62
           L GY   L Q +WMTL++A  +L + L L L+ A  +++  K ++ P TL  T+IR +P+
Sbjct: 7   LHGYGPMLAQGAWMTLKLAFLALALSLALGLIAAAAKLSSAKWLRVPATLYTTLIRSVPD 66

Query: 63  LLVVLFIYFGSTQVLFFITG----EFIEISPFISGVIALSLIFASYASQTLRGALKAVGR 118
           L+++L I++     L  ++     ++ EI PF +GVI L  I+ +Y ++  RGA+ +V  
Sbjct: 67  LVLILLIFYSLQLWLNDLSEVFGWDYFEIDPFTAGVITLGFIYGAYFTENFRGAILSVPV 126

Query: 119 GQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQ 178
           GQ EAA+A G+     F  ++ PQ +R ALPGL N WLVLLK TALVS+IG++DL+K AQ
Sbjct: 127 GQLEAATAYGLSRWQRFHLVLFPQLMRFALPGLGNNWLVLLKSTALVSIIGLSDLVKAAQ 186

Query: 179 LTSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNKFS--IQGMS 222
                T+E   +   A ++YLVIT ++ RV+K ++ +++  I+GM+
Sbjct: 187 NAGKTTNEPLYFLILAGLMYLVITTLSNRVLKRLERRYNLGIKGMA 232