Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  158 bits (399), Expect = 1e-43
 Identities = 84/218 (38%), Positives = 139/218 (63%), Gaps = 6/218 (2%)

Query: 3   LTGYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPE 62
           L G+  +L   + MT+++AL +L +GL+L L  A  + +  K ++W      T++RG+PE
Sbjct: 5   LYGFGPALAAGALMTVKLALTALCLGLVLGLAGALAKTSPYKPLQWLGGAYSTIVRGIPE 64

Query: 63  LLVVLFIYFGSTQVLFFITGEF-----IEISPFISGVIALSLIFASYASQTLRGALKAVG 117
           LL VL IYFG+  ++  + GEF     + +S F +GVIAL L F +YA++  RGA+ A+ 
Sbjct: 65  LLWVLLIYFGTVNLMRAL-GEFFGNPDLSLSAFAAGVIALGLCFGAYATEVFRGAILAIP 123

Query: 118 RGQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQA 177
           +G REA  ALG+     F R+++PQ  R ALPGL N +++L+KDTALVS+IG+ ++++ A
Sbjct: 124 KGHREAGIALGLSKFRIFTRLIMPQMWRIALPGLGNLFMILMKDTALVSVIGLEEIMRHA 183

Query: 178 QLTSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNK 215
           Q+    T + FT++  AA +YL +T++    +  ++ +
Sbjct: 184 QIGVTVTKQPFTFFMVAAFMYLGLTVLAMTGMHFLEKR 221