Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  172 bits (437), Expect = 4e-48
 Identities = 88/219 (40%), Positives = 144/219 (65%), Gaps = 4/219 (1%)

Query: 3   LTGYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPE 62
           L G+   L+Q +WMT+++++ SL V +LL L+ A  +++ L  ++ P  L  T+IRG+P+
Sbjct: 16  LKGFGPLLLQGTWMTIKLSVLSLAVSVLLGLLGASAKLSSLPFLRIPAQLYTTLIRGVPD 75

Query: 63  LLVVLFIYFGS----TQVLFFITGEFIEISPFISGVIALSLIFASYASQTLRGALKAVGR 118
           L+++L I++      T +  F+  E+IEI PF +GVI L  I+ +Y ++T RGA+ AV R
Sbjct: 76  LVLMLLIFYSLQTWLTGLTDFMEWEYIEIDPFSAGVITLGFIYGAYFTETFRGAILAVPR 135

Query: 119 GQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQ 178
           GQ EAA+A G+     F  +  PQ +R ALPG+ N W+V+LK TALVS+IG+ DL+K AQ
Sbjct: 136 GQLEAATAYGLKRGQRFRYVTFPQMMRFALPGIGNNWMVMLKATALVSIIGLADLVKAAQ 195

Query: 179 LTSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNKFS 217
               +T++ F +   AA++YL+IT  +  V++ ++ ++S
Sbjct: 196 DAGKSTYQLFYFLVLAALIYLLITSASNFVLRRLERRYS 234