Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  123 bits (309), Expect = 3e-33
 Identities = 65/204 (31%), Positives = 117/204 (57%), Gaps = 5/204 (2%)

Query: 17  TLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPELLVVLFIYFGSTQV 76
           T+++ L S L G+L  ++ A G+++  K  +W  +  + VIRG P L+ +LF++     +
Sbjct: 61  TVRLTLVSGLAGILFGVLAALGKLSAFKPARWLASFYIWVIRGTPLLVQILFVFLALPVL 120

Query: 77  LFFITGEFIEISPFISGVIALSLIFASYASQTLRGALKAVGRGQREAASALGIPPSHAFI 136
           +       +++  F S  +AL+    +Y ++++R  L AV RGQ EA+ +LG+   + F 
Sbjct: 121 I-----PALQLDDFTSACVALAFNAGAYNAESIRAGLLAVPRGQTEASRSLGLSRGYTFF 175

Query: 137 RIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQLTSAATHEAFTWYATAAV 196
            +VLPQA + +LP L+N ++ LLKD++L   IGV +L        AAT +     AT AV
Sbjct: 176 DVVLPQAFKVSLPPLVNNFISLLKDSSLAYAIGVVELTNVGNRMQAATFQPLPALATIAV 235

Query: 197 VYLVITLITQRVVKVIDNKFSIQG 220
           +YL++T    ++   ++N+  ++G
Sbjct: 236 IYLLLTTALTQISNAVENRLDVEG 259