Pairwise Alignments

Query, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., FIG01200701: possible membrane protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  179 bits (455), Expect = 1e-49
 Identities = 122/430 (28%), Positives = 210/430 (48%), Gaps = 51/430 (11%)

Query: 7   STLAVVMAMAFSSSAFASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAVYRKNDSFG 66
           S +A+ +++  +  A A+N   +AR   MG TGV++A+Y      NPAL A  +  D+  
Sbjct: 8   SLIAIAVSLFMAKQASAANTWTEARNDAMGGTGVASANYGSGVLLNPALLAKAKPEDNIT 67

Query: 67  ILLPSIGLRAEDKDESLKTIDDLQDSIEQFERA----GVGAATQENVDQLNRY---LDQL 119
           ++LP++G++  DKD     IDD+ D ++ ++       +G         LN++      L
Sbjct: 68  VVLPAVGVQITDKDNLQDEIDDISDKVDYYDEVVDNLTLGQILLNPRGVLNQFQGAARDL 127

Query: 120 ADD------KPLAVTAGIGIAVALPLDAVSLNFFTRGYA-----------------EVIA 156
           AD+      K     AG G+AV++P   +S+ F  +GYA                 ++  
Sbjct: 128 ADELEYLNGKTARANAGAGLAVSIPGQTLSVAFIAKGYAHGRVSSSIDQNDIQYLRDIQH 187

Query: 157 KANVAAKSGNSANEVKTRYESSDVDLTAFG----YTEVGLAVGKQVVLGGQTVALGVTPK 212
              VA +    A  + +   +  ++ TA G     ++ G+A+ KQ V+G   V++GVTPK
Sbjct: 188 DERVALREAGRAALLGSDEITKHLNSTASGRVAIVSDYGIALAKQFVVGEVPVSIGVTPK 247

Query: 213 VQQLRTYQDNASVKSFDLDDYDKSEVK--DNSFNLDMGAV------WLIDQYRVGIVAKD 264
           +Q+   Y    S+ ++D  D++ S  +  D  FN+D G        W +      +V++D
Sbjct: 248 LQKTWLYNYTTSIYNYDSSDWNSSRYRNDDTGFNIDAGLAADIGENWTLGVSGQNLVSRD 307

Query: 265 LFAKDI--------QTQNRNNTYKLDTQIAVSGSYVSDFFIAAVDLDLTKQRRFNGDNDD 316
           +  KDI        +T N  +TY++   +    ++ +D    + D DLT+ + F  + D+
Sbjct: 308 IDTKDIYITNGMTGETTNYKDTYQIRPLVTAGIAWHNDLLTVSADGDLTETKGFKSE-DN 366

Query: 317 TQFMRFGVEGNAWGWAQLRAGYEVDLQNSLDNSVSVGLGVSPWDVVSLDLAGSYAGDNQF 376
           +Q++  G E     W  +RAGY  D++N+  N V+ GLG +P++ V LDL G Y  D  +
Sbjct: 367 SQYVGVGAEVRPLSWLAVRAGYRADVKNNDSNVVTGGLGFAPFNRVHLDLMGLYGEDETW 426

Query: 377 GLSANLAFTF 386
           G  A L  TF
Sbjct: 427 GAGAQLTMTF 436