Pairwise Alignments

Query, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., F plasmid transfer operon, TraF, protein from Enterobacter asburiae PDN3

 Score =  170 bits (431), Expect = 6e-47
 Identities = 116/430 (26%), Positives = 205/430 (47%), Gaps = 51/430 (11%)

Query: 7   STLAVVMAMAFSSSAFASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAVYRKNDSFG 66
           S +++ +++  ++ A A+N   ++R   MG TGV+   Y      NPAL A  + +D   
Sbjct: 8   SVVSIAVSLFMANQAGAANTWTESRSDAMGGTGVAAGSYGSGALINPALLAKAKPDDDVT 67

Query: 67  ILLPSIGLRAEDKDESLKTIDDLQDSIEQFERAGVGAATQE-------NVDQLNRYLDQL 119
           ++LPS+G++  D+D     ID + D I  ++        ++       +++Q       L
Sbjct: 68  VILPSVGVQVTDEDNLQDEIDTINDKINHYKDVVDDLTPRDIITNPLGSINQFQGAAKDL 127

Query: 120 ADD------KPLAVTAGIGIAVALPLDAVSLNFFTRGYA--------------------- 152
           AD+      K    TAG G+AV++P D +S+ F  +GYA                     
Sbjct: 128 ADELDYLKGKTARATAGAGLAVSIPNDVLSVAFMAKGYAHGRVSSSIDQQDIDYLRGIQQ 187

Query: 153 EVIAKANVAAKSGNSANEVKTRYESSDVDLTAFGYTEVGLAVGKQVVLGGQTVALGVTPK 212
             +  A VA  +  +  +  T+  +S     A   ++ G+AV +Q  LGG  V++GVTPK
Sbjct: 188 SKVVAAGVALDAALNGTDQITKNLNSTASGRAAIVSDYGVAVARQFDLGGVPVSVGVTPK 247

Query: 213 VQQLRTYQDNASVKSFDLDDYDKSEVK--DNSFNLDMG-AVWLIDQYRVGIVAKDLFAKD 269
           +Q+   Y    S+  +D + ++ S  +  D  FN+D G A    + + VG+  ++L ++D
Sbjct: 248 LQKTWVYNYTTSIYDYDSNKWNDSRYRTDDTGFNVDAGIAADFGEHWTVGVSGQNLMSRD 307

Query: 270 IQTQN---RN----------NTYKLDTQIAVSGSYVSDFFIAAVDLDLTKQRRFNGDNDD 316
           I T++   RN          +TY++   +    ++ +D      D DLT+ + F  + D 
Sbjct: 308 IDTKDIRIRNGRTGEVVSYKDTYQIRPLVTAGAAWHNDLVTLTADGDLTETKGFKSE-DT 366

Query: 317 TQFMRFGVEGNAWGWAQLRAGYEVDLQNSLDNSVSVGLGVSPWDVVSLDLAGSYAGDNQF 376
           +Q++  G E     W  +RAGY  D++ +  N  + G+G +P+  V +DL G Y  D  +
Sbjct: 367 SQYVGVGAEVTPLSWLAVRAGYRADVKGNDSNVFTGGVGFAPFSTVHVDLMGLYGEDETW 426

Query: 377 GLSANLAFTF 386
           G  A L+ TF
Sbjct: 427 GAGAQLSMTF 436