Pairwise Alignments

Query, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., conjugal transfer protein TraF from Dickeya dadantii 3937

 Score =  157 bits (398), Expect = 4e-43
 Identities = 123/410 (30%), Positives = 205/410 (50%), Gaps = 36/410 (8%)

Query: 10  AVVMAMAFSSS-AFASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAVYRKNDSFGIL 68
           A+ +A  FS +  FA+    DAR   MG TGV+++ Y  A   NPAL    + +D+  ++
Sbjct: 9   AMTVAGLFSPAITFAAGTWSDARNDAMGGTGVASSHYGSAALANPALLTKAQASDNVSLI 68

Query: 69  LPSIGLRAEDKDESLKTIDDLQ---DSIEQFERAGVGA--------ATQENVDQ---LNR 114
           LPS+G+   D ++     D ++   DSI+    +  G         A Q+ +     L  
Sbjct: 69  LPSVGVVVSDPEKVEDKFDRIKNSWDSIKDVLNSSSGITNPLLRRLALQQGISSFQSLRS 128

Query: 115 YLDQLADDKPLAVTAGIGIAVALPLDAVSLNFFTRGYAEVIAKANVAAK------SGNSA 168
            L+ + DD+     A   + VA+P + +      +G+    AKA V  +      S  + 
Sbjct: 129 DLNSINDDRAYGDAAAATV-VAVPNETLPFAVVVKGWGVANAKAVVTDRDLAYLDSVAAG 187

Query: 169 NEVKTRYESSDVDLTAFG----YTEVGLAVGKQVVLGGQTVALGVTPKVQQLRTYQDNAS 224
             + T  + ++    A G     TE G+A+ K   + GQ V++G+TPK+Q++ TY   AS
Sbjct: 188 TTIPTSADLNNFTSRAEGAGALVTEYGVAMAKAFSIAGQPVSVGITPKLQRIDTYNYIAS 247

Query: 225 VKSFDLDDYDKSEVKDNS--FNLDMG-AVWLIDQYRVGIVAKDLFAKDIQT---QNRNNT 278
           + ++   D+  SE K +S   NLD+G +  L  ++  G+VA++L  + I T   Q    T
Sbjct: 248 INNYSSSDFRNSEFKKSSSGANLDLGFSTDLTSRWSAGLVAQNLIGRRIDTKEVQGIQRT 307

Query: 279 YKLDTQIAVSGSYVSDFFIAAVDLDLTKQRRFNGDNDDTQFMRFGVEGNAWGWAQLRAGY 338
           + L  Q+    ++ +D    A D+DLT    F+ +  + Q+   G E     WAQLR GY
Sbjct: 308 FHLRPQVTAGTAWSTDALTLATDIDLTPASGFDSEKKN-QYAGVGAEYRVLSWAQLRVGY 366

Query: 339 EVDLQNSLDNSVSVGLGVSPWDVVSLDLAGSYAGDNQ--FGLSANLAFTF 386
             ++++S  N V+ GLG+SP+  V LDL G    +++  +G +A L+FTF
Sbjct: 367 RANMRDSDKNLVTAGLGLSPFG-VHLDLTGMVGTESKHTYGAAAKLSFTF 415