Pairwise Alignments

Query, 364 a.a., autoinducer 2-binding periplasmic protein LuxP from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 3/173 (1%)

Query: 175 YIGFDHEYGAQLLAQYYQAHAPK--KPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLAS 232
           +I  D+  G ++   Y    A +  K   +   +    +  RG+ F Q + A H F + +
Sbjct: 125 HIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAV-AAHKFNVLA 183

Query: 233 SYYTKATEQSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGS 292
           S         G     N++  +P++  ++A   ++ALGA +AL+   + D++V G+ G  
Sbjct: 184 SQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKADVMVVGFDGTP 243

Query: 293 AELEALAKGELDVTVMRMNDDTGVAMAEAIKWDLEGKSVPLVYSGDFEVVTKQ 345
              +A+  G+L  T+ ++ D  G    E     L+G+ V   Y  D ++V KQ
Sbjct: 244 DGEKAVKDGKLAATIAQLPDQIGAKGVEVADKVLKGEKVQAKYPVDLKLVIKQ 296