Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  226 bits (575), Expect = 1e-62
 Identities = 139/394 (35%), Positives = 219/394 (55%), Gaps = 18/394 (4%)

Query: 454  QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDE 513
            QD++    AE     A+  AE++ R++++FLA MSHE+RTP+N ++G+S L  +T L   
Sbjct: 860  QDVSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTPR 919

Query: 514  QREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEK 573
            Q ++V  + S+G+HLL ++NDILDFS++E GK  ++  +F L +++  I  +       K
Sbjct: 920  QHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAK 979

Query: 574  GLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIE-GDPLAQLV 632
             LELV +        +  D +R+ QIL N  NNA+KFT  G I +  ++ E  +    L 
Sbjct: 980  SLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEVLLY 1039

Query: 633  IQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEY 692
              V DTGIGI  +    +F+ F QA+++TTR++GG+GLGL I   L E++ G++ V SEY
Sbjct: 1040 FAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEY 1099

Query: 693  GIGTR--FEIQLPIELVEKPDAPQQLLPAPDPQPLFDKTLRVLLVEDNHTNAFIAQAFCR 750
            G G+   F  ++ I  V K    ++LLP+PD      +  RVL+V+DN     +      
Sbjct: 1100 GKGSTFWFTARMGIGTVRK----RRLLPSPDL-----RGRRVLVVDDNDNARTVLADLMA 1150

Query: 751  KYGLDVSWVTDGLQAIEELKI-----HDYDLVLMDNQLPYLDGVETTRTIKKV-LHLPVV 804
                 V+    GL+A++E+K        Y++VL+D ++P +DG+ET   +  + L     
Sbjct: 1151 GMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMPGMDGIETAHHLMALGLDPAPR 1210

Query: 805  VYACTADGLEETRQAFFHAGAEYVLVKPLKEQTL 838
            +   TA G EE       AG E VL+KP+    L
Sbjct: 1211 LLMVTAYGREEVLNLITEAGIEDVLIKPVSASIL 1244



 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 5/115 (4%)

Query: 731  RVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVE 790
            R+LLVEDN  N  +A       G  V    DG  A+ +++ + YD+VLMD Q+P +DGV 
Sbjct: 1280 RILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGVA 1339

Query: 791  TTRTIKKV---LHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKAL 842
             TR I+++    HLP+V  A TA+ ++  R     AG    + KP+    L  AL
Sbjct: 1340 ATREIRRLGQFDHLPIV--AMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAAL 1392