Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1373 a.a., Sensor kinase protein RcsC from Alteromonas macleodii MIT1002

 Score =  208 bits (529), Expect = 2e-57
 Identities = 115/288 (39%), Positives = 179/288 (62%), Gaps = 10/288 (3%)

Query: 469  ARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCSSGEHL 528
            A  +AEE+ ++++EFLA MSHE+RTP+NGV+G+  LLK++ L  EQ + V +  SS   L
Sbjct: 820  ALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTTEQSQRVNIASSSANSL 879

Query: 529  LAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNITTAAI 588
            LA++NDILDFS++E  K  I+  EF ++EL+ +I +    L  EKGL++VV+ +  + + 
Sbjct: 880  LALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLSKVSESK 939

Query: 589  VRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLI--EGDPLAQLVIQVVDTGIGIREQD 646
            + SD  RI QIL NLL+NA+KFT QG + V  +L+       A + I V DTGIGI    
Sbjct: 940  INSDPSRIQQILTNLLSNAVKFTEQGELSVTAELLPTNNQNTALMHIAVADTGIGIPASK 999

Query: 647  LTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIEL 706
            L  +F+ F Q +++TTR YGG+GLGL+I   L ++L G + V++E G G+RF++   I  
Sbjct: 1000 LPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTELGKGSRFDVTCEIRY 1059

Query: 707  VEKPDAPQQLLPAPDPQPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGL 754
             E+ +A +  L   D        +  L+++DN +     Q+  + +G+
Sbjct: 1060 AEQRNAVRPQLAKQD--------MCCLIIDDNASTRRAMQSQLKLWGV 1099



 Score = 64.7 bits (156), Expect = 4e-14
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 727  DKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIE-----ELKIHDYDLVLMDN 781
            D   R+LLVEDN  N  +A       G +V    +G++A+E     +LK H Y  ++MD 
Sbjct: 1242 DNAYRILLVEDNAINQIVATNVLESEGYEVDVANNGVEALELLKSSKLKAH-YSAIVMDC 1300

Query: 782  QLPYLDGVETTRTIK----KVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQT 837
            Q+P +DG E T+ I+      ++  V + A TA+ ++  +     AG +  L KP++   
Sbjct: 1301 QMPEMDGFEATKLIRYGAAGDVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNK 1360

Query: 838  LHKALEHF 845
            +   L+H+
Sbjct: 1361 VTSTLQHW 1368