Pairwise Alignments

Query, 236 a.a., flagellar brake protein from Vibrio cholerae E7946 ATCC 55056

Subject, 227 a.a., Flagellar protein YcgR from Alteromonas macleodii MIT1002

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 12/187 (6%)

Query: 20  SEDLNKLALLLKPGMKVSTEIHFGPEDTYAFHTTLIGHKIEQYIVLDLPLKAHQALVMRK 79
           SED  +    L PG  V  +I   P       T  IG  I++ ++  +P  A    V   
Sbjct: 11  SEDNLESLRTLVPGDTVDLQIAM-PAAPKRVKTDYIGMLIDECLLFHIPTSAKWITVRDA 69

Query: 80  LK-NVAIVLRGMCDTELGHILAFQSSILQPSTKPFCVLFIRPPKHFATKAIRSHER---- 134
           L     IV+R + + + G ++AF+  +L+  +KP  +L    PK   +  +R+ +R    
Sbjct: 70  LTVGNDIVVRSVLEGDTGQVIAFKVKVLKLLSKPSGLLITTFPKRIESIGLRAVKRAQLG 129

Query: 135 YKVAIPAEVSEDNKNYAGTLVDFSISGCGVFIRGENELHM---GSKVRINSELD---PFL 188
             V + A+V   ++N  G ++D S  GC V ++ +    +    ++V++N  LD     L
Sbjct: 130 VSVTLEADVYPSDENVTGIIIDLSEKGCKVALQVKPNWPVMLDEAEVKLNYSLDGKEVAL 189

Query: 189 PKRLKSH 195
             ++K+H
Sbjct: 190 TAKVKNH 196