Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  163 bits (412), Expect = 1e-44
 Identities = 112/311 (36%), Positives = 166/311 (53%), Gaps = 16/311 (5%)

Query: 15  RKARILAEKLLEEKSRALYDKVLELQSTLEQ----LNGAQAQLLQSEKMASVGQLAAGVA 70
           R+AR  AE+   +    L D+  +L+  +E+    L  AQ + LQ+ +MASVGQLAAG+A
Sbjct: 337 REAR--AEERARQAQLELADQHAQLERLVEERTEALKQAQIEALQASRMASVGQLAAGIA 394

Query: 71  HEINNPIGFCLSNLNTLRDYAEVFAQLADFVEQSAPSFE-GSEFYQAWMRFKQQHDLA-- 127
           HEIN PI +   NL  ++  AE    L       A S+  G         F Q +D A  
Sbjct: 395 HEINTPIQYVGDNLAFIQSAAEAVFPLLSEARALAESWRVGEGDAGKTEEFLQHYDAAGL 454

Query: 128 -FVREDVLSLVEESASGLHRVKDIVTSLQSVSHSSDGRFAECNLNDCIESALRIVWNQFK 186
            F+ E+ L  V +S  G+ +V  IV S++  SH    +    ++N  ++S L +  N +K
Sbjct: 455 DFLMEETLPAVTQSLEGVAQVARIVLSMKEFSHPGTSQKTAVDINRALDSTLVVCRNTWK 514

Query: 187 YTMLVDRQLAENLPKIKGIAPEIQQVLMNMFINASHACDEHGEL---TITTDTLNEKGKA 243
           +   ++ +    LP +     E+ QV +N+ +NA+HA +E G+    TIT +T       
Sbjct: 515 HVARMETRFDPALPLVNCHPGEMNQVFLNLIVNAAHAIEESGKPLPGTITAETA--LCGD 572

Query: 244 WVQVQIADNGHGISPEHLAKIFDPFFTTKPVGVGTGLGLSIAFG-IVEKHQGKISVTSEV 302
           W +++I+D+G GIS E    IFDPFFTTK VG GTG GL+I +  +V KH G+I V  E 
Sbjct: 573 WAEIRISDSGTGISDEIAQHIFDPFFTTKEVGKGTGQGLAICYDVVVNKHGGQIVVGGEP 632

Query: 303 GQGTRFTLLFP 313
             G  FT+  P
Sbjct: 633 EHGAIFTIRIP 643