Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  141 bits (356), Expect = 6e-38
 Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 16/282 (5%)

Query: 43   LEQLNGAQAQLLQSEKMASVGQLAAGVAHEINNPIGFCLSNLNTLRDYA-------EVFA 95
            +E L  AQ + LQ+ ++ASVGQLAAG+AHEIN PI +   NL  + D             
Sbjct: 735  IEALKRAQREALQASRLASVGQLAAGIAHEINTPIQYVGDNLRFISDSLIKLMSALTAAR 794

Query: 96   QLADFVEQSAPSFEGSEFYQAWMRFKQQHDLAFVREDVLSLVEESASGLHRVKDIVTSLQ 155
            +L   V Q     E +  ++A  R  +   + F+  ++ + + ES  G+ ++  IV S++
Sbjct: 795  ELGSEVGQIPALAEAAAKFEAAFRTTK---IPFLVAEIPAALSESLDGVAQIARIVLSMK 851

Query: 156  SVSHSSDGRFAECNLNDCIESALRIVWNQFKYTMLVDRQLAENLPKIKGIAPEIQQVLMN 215
              SH         ++N  ++S L +  N +K++  V+R     LP +   A E+ QV +N
Sbjct: 852  EFSHPGTSSKIMTDINRALDSTLTVSRNVWKHSAEVERNFDPTLPPVLCHAGELNQVFLN 911

Query: 216  MFINASHACDEHGEL---TITTDTLNEKGKAWVQVQIADNGHGISPEHLAKIFDPFFTTK 272
            + +NA+HA +  G+     IT  T  + G   V + +AD+G G+      +IFDPFFTTK
Sbjct: 912  LIVNAAHAIESSGKPLPGRITISTGRDGGH--VVITVADSGTGVPEAIRERIFDPFFTTK 969

Query: 273  PVGVGTGLGLSIAFGIV-EKHQGKISVTSEVGQGTRFTLLFP 313
             VG GTG GL+I   +V  KH G + +    G G  F +  P
Sbjct: 970  EVGKGTGQGLAICRDVVMTKHGGSLDLGDNAGDGAVFVVRLP 1011