Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Sensor protein of zinc sigma-54-dependent two-component system from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  114 bits (284), Expect = 6e-30
 Identities = 89/262 (33%), Positives = 128/262 (48%), Gaps = 42/262 (16%)

Query: 55  QSEKMASVGQLAAGVAHEINNPIGFCLSNLNTLRDYAEVFAQLADFVEQSAPSFEGSEFY 114
           + EK+ ++G LAAGVAHEI NP    LS++  L  Y         F E++    E  E  
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNP----LSSIKGLAKY---------FAERTPAGGESHELA 286

Query: 115 QAWMRFKQQHDLAFVREDVLSLVEESASGLHRVKDIVTSLQSVSHSSDGRFAECNLNDCI 174
           Q     K+   L  V  ++L LV          K    +LQ+V           NLND I
Sbjct: 287 QVMA--KEADRLNRVVSELLELV----------KPAHLTLQTV-----------NLNDII 323

Query: 175 ESALRIVWNQFKYTMLVDRQLA-ENLPKIKGIAPEIQQVLMNMFINASHACDEHGELTIT 233
             +L +V    +   +  R  A E L +I+     + QVL+N+++NA HA    G +++ 
Sbjct: 324 THSLNLVSQDAQSREIQLRFTANETLKRIQADPDRLTQVLLNLYLNAIHAIGRQGTISVE 383

Query: 234 TDTLNEKGKAWVQVQIADNGHGISPEHLAKIFDPFFTTKPVGVGTGLGLSIAFGIVEKHQ 293
                E G   V + + D+G GI+P+ L  IF P+FTTK    GTGLGL++   I+E+H 
Sbjct: 384 A---KESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTK--ADGTGLGLAVVQNIIEQHG 438

Query: 294 GKISVTSEVGQGTRFTLLFPAI 315
           G I V S  G+G  FT+  P I
Sbjct: 439 GAIKVKSIEGKGAVFTIWLPVI 460