Pairwise Alignments

Query, 725 a.a., TIGR01666 family membrane protein from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., Inner membrane protein YccS from Pseudomonas lactucae CFBP13502

 Score =  610 bits (1574), Expect = e-179
 Identities = 327/712 (45%), Positives = 445/712 (62%), Gaps = 7/712 (0%)

Query: 9   NQLRLYWANKTVNYSVLILLTLLGVVIPAWYYQLNTWITPLILGVIAAALADRDDRFSGR 68
           + LR  WA    +YS+ + + L G +   WY    T + PL LG+IA+ALA+ DD + GR
Sbjct: 8   HSLRRLWALDKFSYSIRVFIALTGSMALCWYQDEMTLLIPLFLGIIASALAETDDSWQGR 67

Query: 69  LKSIILTLICFAIAAFSIEILFQTPWLFALGLFTSSFGFIMLGAMGARYASIAFASLLVA 128
           L ++ +TL+CF+IAA S+E+LF  PW+FA+ L  ++FG  MLGA+G RY +IA A+L+++
Sbjct: 68  LNALAVTLVCFSIAALSVELLFPYPWIFAISLALATFGLTMLGALGERYGAIASATLILS 127

Query: 129 VYTMLGAHQS----TNIWFQPLLLLSGSAWYYLMSMLWHAFWPMQPVQQNLANVFLQLAN 184
           VYTM+G  Q      + W +PLLL++G+AWY  +S+LW A +  QPVQQ+LA +F +L  
Sbjct: 128 VYTMIGVDQRGGAVNDFWHEPLLLVAGAAWYGALSVLWQALFSNQPVQQSLARLFRELGR 187

Query: 185 YLEAKSTLFHPVSNMIPQPHRIIEANLNAATVNALNQCKAVFLTRSKRGHVDSASDRFLN 244
           YL+ KS+LF P+  +  +  R+  A  N   V ALN  K + L R   G   S   R+L 
Sbjct: 188 YLKLKSSLFEPIRQLDVEARRLELAQQNGRVVAALNAAKEIILHRVGNGRPGSKVSRYLK 247

Query: 245 IYFLAQDIHERVSSSHYRYQELADHFGRSDILFRFKYLLETQAKACRDIAQSIRLGHSYQ 304
           +YFLAQDIHER SSSHY Y  LA+ F  SD+LFR + LL  Q KAC+ +A+SI+L   + 
Sbjct: 248 LYFLAQDIHERASSSHYPYNALAEAFFHSDVLFRCQRLLRQQGKACQALAESIQLRQPFI 307

Query: 305 HDSASIVALDELQLSLSYLRQQERRDWKSLLGQLGYLFNNLATVEKQLNNVSNPD-VAKP 363
           +D     AL +L  SL +LR Q    W+ LL  L  L  NL+T+++ L + SNPD +A  
Sbjct: 308 YDDGFAEALSDLNASLEHLRIQSNPAWRGLLRSLRALAANLSTLDRLLGDASNPDALADA 367

Query: 364 EEGVLDDTEAHTLGSMWQRIRANLNKDSLLFRHALRLSITLTLGYAIIQGFGIERGYWIL 423
            +  L D     L  MW R+R  L   SLLFRHALRLS+ L++GY  +      +GYWI+
Sbjct: 368 TDSNLLDRAPRNLREMWTRLRTQLTPTSLLFRHALRLSLALSIGYGTLHVIHASQGYWII 427

Query: 424 LTTLFVCQPNYAATKQKLTARIIGTLAGLLIGVPLLTFFPSQESQLVFIVFSGVMFFAFR 483
           LTTLFVCQPNY AT++KL  RIIGT  GL +   L   FPS   Q +F + +G++FF  R
Sbjct: 428 LTTLFVCQPNYGATRRKLGQRIIGTAIGLTVAWALFDLFPSPLVQSMFAIAAGLVFFINR 487

Query: 484 LNNYGYATGFITLLVLFCFNQLGEGYAVVLPRLADTLIGCALAVAAVVLILPDWQSKRLH 543
              Y  AT  ITL+VLFCFNQ+G+GY + LPRL DTL+G  +A  AV L LPDWQ +RL+
Sbjct: 488 TTRYTLATAAITLMVLFCFNQVGDGYGLFLPRLLDTLLGSLIAGLAVFLFLPDWQGRRLN 547

Query: 544 KVMAEAIDANKQYLAQIIGQYRIGKKDSLSYRIARRHAHNQDAALSAAVTNMLAEPGRYR 603
           KV+A  +  N  YL QI+ QY +GK D L+YR+ARR+AHN DAALS  + NML EPG +R
Sbjct: 548 KVLANTLTCNSIYLRQIMQQYAVGKSDDLAYRLARRNAHNADAALSTTLANMLMEPGHFR 607

Query: 604 AAADESFRFLTLNHALLSYISALGAHR-TRLDDETVHQLVLDSHRVIHQHLDLLHQQLSN 662
             AD  FRFL L+H LLSY+S LGAHR T+L  E    L+  + + +   +D +   L+N
Sbjct: 608 KEADVGFRFLVLSHTLLSYLSGLGAHRDTQLPAEVREHLIDGAGKTLATSIDEIATGLAN 667

Query: 663 HCEECDTSGIDSSGLEKRLAEWREDDEGSARMVLQQLHLIYRMLPELHTLAS 714
                  S  + + L   L +  ++ +   R+V  QL LI R L  L TLA+
Sbjct: 668 KQPIAIQSDAEEA-LAADLEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAA 718